Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0146
(705 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_1089 + 10004773-10004831,10004924-10005033,10005631-100057... 34 0.13
03_05_0615 + 26137785-26138593,26139307-26141368 33 0.17
04_01_0246 + 3225743-3226473,3226493-3226624,3227580-3227670,322... 31 0.67
04_01_0223 + 2813129-2814014,2815928-2816309,2816358-2816459,281... 30 1.6
02_01_0189 - 1273313-1274157,1274595-1275549 30 1.6
12_02_0977 + 24999211-25000275,25000375-25000521,25000805-25001179 29 3.6
04_03_0096 + 11158108-11159083,11159116-11159744 29 4.8
07_01_1096 - 10063016-10063117,10063530-10063580,10063924-100640... 28 8.3
03_05_0032 + 20043252-20044361 28 8.3
>07_01_1089 +
10004773-10004831,10004924-10005033,10005631-10005749,
10005833-10005930,10006834-10006921,10006993-10007127,
10007211-10007313,10007506-10007618,10007821-10007868
Length = 290
Score = 33.9 bits (74), Expect = 0.13
Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Frame = +2
Query: 26 HQETAKVVHLVN--YTHTDLPRNIRQGMSIVTKHLSYTAEALLKSVPVE-TAITEIKGWR 196
+ +TA+ HL N + LPRN + M ++ KHL + + L+ + T +T+ +
Sbjct: 62 YMKTAERAHLPNKLWERVKLPRNYEKAMEVINKHLEFWPKLLVHKIKQRLTKMTQYRIRM 121
Query: 197 SKLEVLLQQ 223
KL++ +++
Sbjct: 122 RKLQLKVRE 130
>03_05_0615 + 26137785-26138593,26139307-26141368
Length = 956
Score = 33.5 bits (73), Expect = 0.17
Identities = 19/73 (26%), Positives = 36/73 (49%)
Frame = +2
Query: 38 AKVVHLVNYTHTDLPRNIRQGMSIVTKHLSYTAEALLKSVPVETAITEIKGWRSKLEVLL 217
+K+ L + D+ R IR+ ++ +T LS LLK +E +++K WR+K+ L
Sbjct: 13 SKLATLAEQKYGDV-RRIRREITFLTDELSSMNALLLKLADMEELDSQLKEWRNKVRELA 71
Query: 218 QQLQATSKTYLEH 256
++ + H
Sbjct: 72 YDVEDCIDAFAHH 84
>04_01_0246 +
3225743-3226473,3226493-3226624,3227580-3227670,
3228617-3229074,3229342-3229864
Length = 644
Score = 31.5 bits (68), Expect = 0.67
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = -2
Query: 662 FFFMLVYLAIEGSGLQCH*GYREYIFTITLSFN-VKKIFVLIKHMYLVRKKFELCCNLKF 486
+ LVY ++ S L+ H +E + T + VK I + H++ R++F L N+K
Sbjct: 441 YTIFLVYEFVDNSNLRVHLHEKEAVLPWTTRYKIVKDICAALVHLHHERRQFVLHRNIKP 500
Query: 485 HSVLQREYIN 456
+++L + N
Sbjct: 501 NNILLDKEFN 510
>04_01_0223 +
2813129-2814014,2815928-2816309,2816358-2816459,
2816727-2817249
Length = 630
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = -2
Query: 650 LVYLAIEGSGLQCH*GYREYIFTITLSFN-VKKIFVLIKHMYLVRKKFELCCNLKFHSVL 474
LVY ++ S L+ H +E + T + VK I + H++ R+ F L N+K +++L
Sbjct: 431 LVYEFVDNSNLRVHLHEKEAVLPWTTRYKIVKDICAALVHLHHERRPFVLHRNIKPNNIL 490
Query: 473 QREYIN 456
+ N
Sbjct: 491 LDKEFN 496
>02_01_0189 - 1273313-1274157,1274595-1275549
Length = 599
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/33 (51%), Positives = 17/33 (51%)
Frame = -2
Query: 107 STCLDGCFLEGLCVYS*RDARPLLFPGETCSPG 9
S DGC LEGLCV S DA G C PG
Sbjct: 552 SVVRDGCALEGLCVCS-EDAHCSPEKGYLCRPG 583
>12_02_0977 + 24999211-25000275,25000375-25000521,25000805-25001179
Length = 528
Score = 29.1 bits (62), Expect = 3.6
Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Frame = +2
Query: 38 AKVVHLVNY---THTDLPRNIRQGMSIVTKHLSY-TAEA 142
A+VV L N HT LPR + G S+V HL Y T EA
Sbjct: 200 ARVVVLANLYLLEHTRLPRALLDGTSLVALHLFYFTVEA 238
>04_03_0096 + 11158108-11159083,11159116-11159744
Length = 534
Score = 28.7 bits (61), Expect = 4.8
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Frame = +2
Query: 68 HTDLPRNIRQGMSIVTKHLSYTAEALLKSVPVE----TAITEIKGWRSKLEVLLQQLQAT 235
H +LPR++ +++ T LSY LL+S+ + +T I G RS+++ L+
Sbjct: 179 HYELPRSLYSCVALQTLCLSYCDLNLLESIDLSLLKTMRLTGIHGSRSRIQRLISSCPRL 238
Query: 236 SKTYLEHL 259
+ LE L
Sbjct: 239 ADLTLEAL 246
>07_01_1096 -
10063016-10063117,10063530-10063580,10063924-10064033,
10064367-10064454,10064543-10064603,10065198-10065295,
10065394-10065512,10066593-10066702,10066801-10066859
Length = 265
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/65 (21%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = +2
Query: 26 HQETAKVVHLVN--YTHTDLPRNIRQGMSIVTKHLSYTAEALLKSVPVETAITEIKGWRS 199
+ +TA+ H N + LPRN + + ++ +HL + + L+ ++ +T++ +R
Sbjct: 62 YMKTAERAHHPNKLWERVKLPRNYEKAIEVINRHLEFWPKLLVHK--IKQRLTKMTQYRI 119
Query: 200 KLEVL 214
++ L
Sbjct: 120 RMRKL 124
>03_05_0032 + 20043252-20044361
Length = 369
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = -2
Query: 92 GCFLEGLCVYS*RDARPLLFPGETCSPG 9
GC LEG+CV S +DA G C PG
Sbjct: 331 GCALEGMCVCS-QDAHCAPEQGYVCRPG 357
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,006,555
Number of Sequences: 37544
Number of extensions: 399473
Number of successful extensions: 1011
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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