Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0146
         (705 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49619| Best HMM Match : C4dic_mal_tran (HMM E-Value=2)              31   0.91 
SB_30511| Best HMM Match : Transposase_20 (HMM E-Value=8.3e-25)        31   1.2  
SB_55624| Best HMM Match : PHD (HMM E-Value=3.8)                       29   3.7  
SB_41825| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_49619| Best HMM Match : C4dic_mal_tran (HMM E-Value=2)
          Length = 630

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
 Frame = +3

Query: 39  QRSCISSTIHTQTFQETSVKACRLLRSICRIQQR------HYSSLYPWRLQSLK*R-DGE 197
           QRSC     HT+   +  V     ++  C IQ+       H   +Y  R+ S K R  G 
Sbjct: 442 QRSCTRRASHTKVVYKVRVSYKGRVQGACLIQRSCTRCASHSKVVYKVRV-SFKGRVQGA 500

Query: 198 ANLRSCCSSCRPHPKLTWSI 257
             ++  C+ C PH K+ + +
Sbjct: 501 PLIQRSCTRCAPHSKVVYKV 520



 Score = 30.3 bits (65), Expect = 1.6
 Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 7/83 (8%)
 Frame = +3

Query: 30  RKQQRSCISSTIHTQTFQETSVK-------ACRLLRSICRIQQRHYSSLYPWRLQSLK*R 188
           R  QRSC     HT+   +  V        AC + RS C  +  H   +Y  R+      
Sbjct: 408 RLMQRSCTRCVSHTKVVYKVRVSYKGRVQGACLIQRS-CTRRASHTKVVYKVRVSYKGRV 466

Query: 189 DGEANLRSCCSSCRPHPKLTWSI 257
            G   ++  C+ C  H K+ + +
Sbjct: 467 QGACLIQRSCTRCASHSKVVYKV 489


>SB_30511| Best HMM Match : Transposase_20 (HMM E-Value=8.3e-25)
          Length = 317

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 10/46 (21%), Positives = 27/46 (58%)
 Frame = +2

Query: 77  LPRNIRQGMSIVTKHLSYTAEALLKSVPVETAITEIKGWRSKLEVL 214
           +P+ +   + ++ KHL    + + + +  +  ++E+K WR+K ++L
Sbjct: 154 MPKELHSSIKLLLKHLEKEIDKITQKI--DLLVSEVKHWRTKTKIL 197


>SB_55624| Best HMM Match : PHD (HMM E-Value=3.8)
          Length = 349

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = -3

Query: 250 QVSFGCGLQLLQ--QDLKFASPSLYFSD-CSLHGYRLE*C 140
           Q  FG  L+L Q  ++ K    SLY  D C LHGY +  C
Sbjct: 122 QEKFGDALKLFQHCKEAKRCKSSLYTVDECELHGYHMACC 161


>SB_41825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 825

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +3

Query: 186 RDGEANLRSCCSSCRPHPKLTWSI*PYSWPVTRSGRRLRHGRL 314
           R GE+ +  C +S  P P+ TW        VT S R + HG+L
Sbjct: 509 RTGESAVLECKASGSPMPRFTWY--KDDKKVTLSARVVAHGQL 549


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,420,727
Number of Sequences: 59808
Number of extensions: 486985
Number of successful extensions: 1275
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1272
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)