Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0146
         (705 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016445-3|AAC69063.2|  372|Caenorhabditis elegans Serpentine re...    28   7.5  
U53141-7|AAA96109.1|   82|Caenorhabditis elegans Hypothetical pr...    27   9.9  
U00066-9|AAA50743.3|  780|Caenorhabditis elegans Mediator protei...    27   9.9  
U00066-8|AAM54164.1|  777|Caenorhabditis elegans Mediator protei...    27   9.9  

>AF016445-3|AAC69063.2|  372|Caenorhabditis elegans Serpentine
           receptor, class w protein133 protein.
          Length = 372

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -2

Query: 662 FFFMLVYLAIEGSGLQCH*GYREYIFTITLSFNVKKIFVL 543
           F   + +  ++  GLQ    Y +Y+F++ L+ N    FV+
Sbjct: 290 FSMAVTWFFVDVPGLQLIFSYSQYLFSVVLTINTSSHFVI 329


>U53141-7|AAA96109.1|   82|Caenorhabditis elegans Hypothetical
           protein C14C11.7 protein.
          Length = 82

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 320 ARKPTVAQSSPAPRYRPRIWLNAP 249
           A  P  AQ +PAP  +P+ +++AP
Sbjct: 42  APPPPAAQQAPAPAEQPKFYISAP 65


>U00066-9|AAA50743.3|  780|Caenorhabditis elegans Mediator protein
           15, isoform a protein.
          Length = 780

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = +2

Query: 200 KLEVLLQQLQA---TSKTYLEHLAIFLAGNEEREKIAPRS 310
           KLEV+L  L+     S  YL HL +++A  ++   IAP S
Sbjct: 403 KLEVMLSVLEGKRVVSLEYLNHLEMWIARKQDFLNIAPMS 442


>U00066-8|AAM54164.1|  777|Caenorhabditis elegans Mediator protein
           15, isoform b protein.
          Length = 777

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = +2

Query: 200 KLEVLLQQLQA---TSKTYLEHLAIFLAGNEEREKIAPRS 310
           KLEV+L  L+     S  YL HL +++A  ++   IAP S
Sbjct: 400 KLEVMLSVLEGKRVVSLEYLNHLEMWIARKQDFLNIAPMS 439


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,740,064
Number of Sequences: 27780
Number of extensions: 364675
Number of successful extensions: 989
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)