Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0146
         (705 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.9  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +3

Query: 153 LYPWRLQSLK*RDGEANLRSCCSSCRPHPKLTWSI*PYSWP 275
           LY +  Q+L+   G A    C ++  P P++TW++  ++ P
Sbjct: 425 LYSFIEQTLQ--PGPAVSLKCSAAGNPTPQVTWALDGFALP 463


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +3

Query: 153 LYPWRLQSLK*RDGEANLRSCCSSCRPHPKLTWSI*PYSWP 275
           LY +  Q+L+   G A    C ++  P P++TW++  ++ P
Sbjct: 425 LYSFIEQTLQ--PGPAVSLKCSAAGNPTPQVTWALDGFALP 463


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +3

Query: 192 GEANLRSCCSSCRPHPKLTWSI 257
           G +    C +S  P P++TW +
Sbjct: 408 GPSMFLKCVASGNPTPEITWEL 429


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,915
Number of Sequences: 438
Number of extensions: 4217
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)