Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0146
         (705 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g46750.1 68415.m05833 FAD-binding domain-containing protein l...    31   0.74 
At2g46760.1 68415.m05834 FAD-binding domain-containing protein s...    30   1.3  
At2g46740.1 68415.m05832 FAD-binding domain-containing protein s...    29   2.3  
At1g32300.1 68414.m03977 FAD-binding domain-containing protein s...    28   6.9  

>At2g46750.1 68415.m05833 FAD-binding domain-containing protein low
           similarity to SP|P58710 L-gulonolactone oxidase (EC
           1.1.3.8) {Mus musculus}; contains Pfam profile PF01565:
           FAD binding domain
          Length = 591

 Score = 31.1 bits (67), Expect = 0.74
 Identities = 15/29 (51%), Positives = 17/29 (58%)
 Frame = -2

Query: 95  DGCFLEGLCVYS*RDARPLLFPGETCSPG 9
           DGC LEGLC+ S +DA      G  C PG
Sbjct: 545 DGCALEGLCICS-KDAHCAPAKGYLCRPG 572


>At2g46760.1 68415.m05834 FAD-binding domain-containing protein
           strong similarity to At1g32300, At2g46740, At2g46750,
           At5g56490; contains PF01565: FAD binding domain
          Length = 603

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/29 (55%), Positives = 16/29 (55%)
 Frame = -2

Query: 95  DGCFLEGLCVYS*RDARPLLFPGETCSPG 9
           DGC LEGLCV S  DA      G  C PG
Sbjct: 553 DGCALEGLCVCS-EDAHCAPTKGYFCRPG 580


>At2g46740.1 68415.m05832 FAD-binding domain-containing protein
           strong similarity to At1g32300, At5g56490, At2g46750,
           At2g46760; contains PF01565: FAD binding domain
          Length = 590

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = -2

Query: 95  DGCFLEGLCVYS*RDARPLLFPGETCSPG 9
           DGC LEGLC+ S  DA      G  C PG
Sbjct: 549 DGCALEGLCICS-DDAHCAPSKGYLCRPG 576


>At1g32300.1 68414.m03977 FAD-binding domain-containing protein
           strong similarity to At5g56490, At2g46740, At2g46750,
           At2g46760; contains PF01565: FAD binding domain
          Length = 595

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = -2

Query: 95  DGCFLEGLCVYS*RDARPLLFPGETCSPG 9
           +GC LEGLCV S  DA      G  C PG
Sbjct: 537 EGCALEGLCVCS-DDAHCAPKKGYLCRPG 564


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,509,381
Number of Sequences: 28952
Number of extensions: 325194
Number of successful extensions: 785
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)