Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0145
         (644 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc...    26   5.3  
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha...    26   5.3  
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    25   7.1  
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom...    25   7.1  
SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc...    25   7.1  
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb...    25   9.3  
SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein Nfs1|S...    25   9.3  
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2...    25   9.3  

>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
           Mus81|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 608

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 16/59 (27%), Positives = 29/59 (49%)
 Frame = +2

Query: 197 TEDYNAMLPRRRNIGVTERLLETETDSYNKLDKKGVHYGESRPYENSSNSKSTLILKSS 373
           T+  N    +R+ + V   L   E  +Y  L ++ +    S PY  S ++ S+++ KSS
Sbjct: 470 TKQINLFYEKRKTLAVIPDL-SIEAKTYESLREQLLKIDPSTPYHISYHAFSSVLSKSS 527


>SPAC750.05c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 18/80 (22%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
 Frame = -1

Query: 266 LFPRVFL*RLYFAFEEASHCSLQSSLRKPIAFK*-LRTFIVHSCVYNIYHFISSILFKTR 90
           +FP +++  +    ++ +  +   +  K   F+  L  FI   C   + H++S+I+F   
Sbjct: 237 VFPAIWVYSICHLLKQCTSVTTYENASKARFFRRMLNAFIFIFCASPMLHYLSNIIFGN- 295

Query: 89  *YIYLLNYQV-PLFHFLDKV 33
            + Y L+  +  LF F++K+
Sbjct: 296 -FDYRLSVIIGDLFTFMEKI 314


>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
           subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 254 LLETETDSYNKLDKKGV 304
           L  T TD+Y+K+D KG+
Sbjct: 798 LFWTRTDTYDKMDSKGI 814


>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 18/86 (20%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
 Frame = +2

Query: 185 F*VKTEDYNAMLPRRRNIGVTERLLETETDSYNKLDKKGVHYGESR--PYENSSNSKSTL 358
           F + +ED +  +PR  N+ +T +   +    Y+  D +      S+    + S   +   
Sbjct: 204 FVIDSEDSDTGIPREENVTITRKTKLSSNILYSDSDTERQSDSGSKNVARQFSRIKRKRK 263

Query: 359 ILKSSDQDVFKFLEEFVFEPVMASRD 436
           +L SS +D      E + +P++ S +
Sbjct: 264 VLSSSSEDDESSSPEDLLKPIIRSTE 289


>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 488

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +2

Query: 266 ETDSYNKLDKKGVHYGESRPYENSSNSKSTLILKSSDQDVF 388
           ET S N+L K G H    +  +   N    ++  + D D+F
Sbjct: 361 ETSSGNELTKFGPHSSPVKTLQFGENGYWLVVTTNDDSDIF 401


>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = +2

Query: 317 SRPYENSSNSKSTLIL--KSSDQDVFK 391
           S PY+N  NSKS  +L  K+ D  + K
Sbjct: 189 SSPYKNKDNSKSNSLLSFKTDDDSITK 215


>SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein
           Nfs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 498

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 26  TYIPYLKNGIVGLDNLKD 79
           T++P   NG++ LD L+D
Sbjct: 216 TFLPVQTNGLINLDELRD 233


>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 803

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
 Frame = +2

Query: 209 NAMLPRRRNIGVTERLLETETDSYNKLDKKGVHYGESRPYENS-SNSKSTLILKSSDQDV 385
           NAM+P+     +   L + E D+  +  ++ VH+      E + +N  ST  + S     
Sbjct: 263 NAMIPQDVLKQIRLILTKKEDDADAENHRRNVHWITKLLGEAALANDLSTSFVISEGSSE 322

Query: 386 FKFLEEFVFEPVMASRDRTSEFISTVRSLQGRFLNKPTVRDDRKAAVLETYSQFMS 553
                ++V      S  R  +F S + S+QG FL +P V DD    ++E Y    S
Sbjct: 323 LFDSSDYV------SVRRPDDF-SFIPSMQGPFLLQPAVADDE---LIEDYCDIYS 368


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,550,407
Number of Sequences: 5004
Number of extensions: 50590
Number of successful extensions: 126
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)