Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0145
         (644 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22014| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-10)                 33   0.20 
SB_11563| Best HMM Match : SNF7 (HMM E-Value=0.28)                     30   1.9  
SB_24733| Best HMM Match : Shugoshin_C (HMM E-Value=4.2)               28   7.5  
SB_29473| Best HMM Match : CASP_C (HMM E-Value=6.5)                    28   7.5  
SB_23387| Best HMM Match : REX1 (HMM E-Value=0.11)                     28   7.5  
SB_22759| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_51158| Best HMM Match : VWD (HMM E-Value=0.058)                     27   9.9  

>SB_22014| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-10)
          Length = 497

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 19/44 (43%), Positives = 26/44 (59%)
 Frame = +2

Query: 431 RDRTSEFISTVRSLQGRFLNKPTVRDDRKAAVLETYSQFMSMAK 562
           RDRT+EF S V+S+Q R     T+  D K +VLE  +Q +   K
Sbjct: 41  RDRTTEFYSAVKSIQSRQSKLATMSKDFK-SVLEVRTQNLKQQK 83


>SB_11563| Best HMM Match : SNF7 (HMM E-Value=0.28)
          Length = 859

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
 Frame = +2

Query: 251 RLLETETDS---YNKLDKKGVHYGESRPYENSSNSKSTLILKSSDQDVFKFLEEFVFEPV 421
           R  E ET++     KLD+   H    +P+E+ S+   T    S+D +  K  E  +   +
Sbjct: 687 RRREAETEAKVLLQKLDRNETHTSRDQPWESVSSHSRTSSGSSNDMEFTKEEETRLKSYI 746

Query: 422 MASRDRTSEFISTVRSLQG-RFLNKP 496
              R   S   STV  L+    ++KP
Sbjct: 747 QQLRSERSTIGSTVLELESIHGMDKP 772


>SB_24733| Best HMM Match : Shugoshin_C (HMM E-Value=4.2)
          Length = 689

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = +2

Query: 305 HYGESRPY--ENSSNSKSTLILKSSDQDVFKF 394
           HY ++ PY  E+ S+  STL ++   QD++K+
Sbjct: 16  HYHDTMPYYEESKSSILSTLYIEEGRQDIYKW 47


>SB_29473| Best HMM Match : CASP_C (HMM E-Value=6.5)
          Length = 389

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 218 LPRRRNIGVTERLLETETDSYNKLDKKGVHY 310
           LPR +++G+ ERL   +   ++ +DK G  Y
Sbjct: 131 LPRHKDLGLLERLRHRKDGHHSNVDKNGNAY 161


>SB_23387| Best HMM Match : REX1 (HMM E-Value=0.11)
          Length = 1011

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 22/87 (25%), Positives = 37/87 (42%)
 Frame = +2

Query: 224  RRRNIGVTERLLETETDSYNKLDKKGVHYGESRPYENSSNSKSTLILKSSDQDVFKFLEE 403
            R  N   T R+ E E D   K+ +KG    E    E S   K  + ++   Q+  K +EE
Sbjct: 784  REANEMKTSRIRELE-DRIEKMKRKGTEDSEKFMKEVSEKEKKLIAMEDKLQECNKTIEE 842

Query: 404  FVFEPVMASRDRTSEFISTVRSLQGRF 484
             +   V +S++        +R  + +F
Sbjct: 843  -LSANVRSSQETIESLSQMLRQEKNKF 868


>SB_22759| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 466

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 22/79 (27%), Positives = 41/79 (51%)
 Frame = +2

Query: 239 GVTERLLETETDSYNKLDKKGVHYGESRPYENSSNSKSTLILKSSDQDVFKFLEEFVFEP 418
           GVT+     E ++  K+++K V+  +    EN+ N K     + ++ ++ K L+  + +P
Sbjct: 138 GVTDIKRRKEMETETKINQKFVNTKKEDIKENNKNYKK----EFNNVELHKELQ--IVDP 191

Query: 419 VMASRDRTSEFISTVRSLQ 475
           VMA R   ++     RSLQ
Sbjct: 192 VMARRIHPNDTRKIARSLQ 210


>SB_51158| Best HMM Match : VWD (HMM E-Value=0.058)
          Length = 496

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 183 TNSVQIITYFHSTFMCVQYLSFHLIDSFQNSMI 85
           T S  II   H T +C   LS+H+ID+  +S +
Sbjct: 429 TLSYHIIDTDHHTEVCTTTLSYHIIDTDHHSEV 461


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,920,105
Number of Sequences: 59808
Number of extensions: 332502
Number of successful extensions: 773
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)