Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0143
         (432 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   1.6  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    22   2.2  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   5.0  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   6.6  
DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory pro...    21   6.6  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    20   8.8  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    20   8.8  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    20   8.8  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 344  WGRLKFFFCFDGVFHDPNK 288
            WG+ + F C  G+  D NK
Sbjct: 1299 WGKYEVFNCAPGLHWDNNK 1317


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 266 PHSAGLTPYSGHGRHHQN 319
           P S G++PY+    HH +
Sbjct: 40  PLSLGMSPYASSQHHHHH 57


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +2

Query: 245 VSSSGLSPHSAGLTPYSGHGRHHQNKRRTSTCPNR 349
           +S SG +P+ +  +PY  +     +K   S C +R
Sbjct: 58  LSPSGNTPNKSSTSPYPPNHPLSGSKHLCSICGDR 92


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 51  HLKDIRPCLSLVPN 10
           HL +I  CL+ VP+
Sbjct: 322 HLSNIEDCLNYVPH 335


>DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory
           protein 11 protein.
          Length = 127

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 349 KMANTDLTRLLKSDEIRK 402
           K  N DL  ++KSD + K
Sbjct: 27  KYDNVDLDEIIKSDRLLK 44


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 5/14 (35%), Positives = 10/14 (71%)
 Frame = -2

Query: 332 KFFFCFDGVFHDPN 291
           +F++C+D  F+  N
Sbjct: 250 QFYYCYDSGFNSDN 263


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 314 DGVFHDPNKGSSLPNAD*VQMT 249
           D +  DP + S L  AD ++MT
Sbjct: 63  DAMKKDPARHSKLEKADILEMT 84


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +1

Query: 307 TPSKQKKNFNLPQPKMANTDLTRLLKSD 390
           T  K K+N   P P+  +  +T L   D
Sbjct: 686 TRDKSKQNEKSPSPQQRSPSVTDLSTKD 713


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,038
Number of Sequences: 336
Number of extensions: 1842
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9565283
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)