Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0143
         (432 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   163   8e-42
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   163   8e-42
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    25   5.0  
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc...    25   5.0  
SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyce...    25   6.6  
SPCC1223.15c |spc19||DASH complex subunit Spc19|Schizosaccharomy...    24   8.7  
SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces po...    24   8.7  
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc...    24   8.7  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  163 bits (397), Expect = 8e-42
 Identities = 73/138 (52%), Positives = 102/138 (73%)
 Frame = +1

Query: 1   AAGIRHEAQAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPG 180
           A  +  E +A+ D++KV  S++LRAGKGK+RNRR +QR+GPL++FN+D G+ +AFRNIPG
Sbjct: 167 AVALLKEIKAYRDVIKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDTGIVKAFRNIPG 226

Query: 181 VEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMAN 360
           VE            APGGHLGRFVIWT+SAFG LD +FGS    ++ KKN+ LP+  ++N
Sbjct: 227 VEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEVAQLKKNYFLPENIISN 286

Query: 361 TDLTRLLKSDEIRKVLRA 414
            D+TRL+ SDEI+ +++A
Sbjct: 287 ADVTRLINSDEIQSIVKA 304


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  163 bits (397), Expect = 8e-42
 Identities = 73/138 (52%), Positives = 102/138 (73%)
 Frame = +1

Query: 1   AAGIRHEAQAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPG 180
           A  +  E +A+ D++KV  S++LRAGKGK+RNRR +QR+GPL++FN+D G+ +AFRNIPG
Sbjct: 167 AVALLKEIKAYRDVVKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDAGIVKAFRNIPG 226

Query: 181 VEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMAN 360
           VE            APGGHLGRFVIWT+SAFG LD +FGS    ++ KKN+ LP+  ++N
Sbjct: 227 VEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEAAQLKKNYFLPENIISN 286

Query: 361 TDLTRLLKSDEIRKVLRA 414
            D+TRL+ SDEI+ +++A
Sbjct: 287 ADVTRLINSDEIQSIVKA 304


>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 245 VSSSGLSPHSAGLTPYSGHGRHHQNK 322
           VS S    HS    P+S  GRH++ K
Sbjct: 120 VSRSSSIGHSGSTAPWSSVGRHNRKK 145


>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 430

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +2

Query: 299 HGRHHQNKRRTSTCPNRRW 355
           HG H       S CPN RW
Sbjct: 378 HGGHTNRISEFSWCPNERW 396


>SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +2

Query: 230 EVILDVSSSGLSPHSAGLTPYSGHG 304
           E IL  S  G+SP   G+T    HG
Sbjct: 35  EQILKFSKKGMSPSQIGVTLRDSHG 59


>SPCC1223.15c |spc19||DASH complex subunit Spc19|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 152

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +3

Query: 267 RIRQA*PLIRVMEDTIKTKEELQPAPTEDGQH*PHTSS 380
           R+  +   ++  ED++KTK ELQ A  +  ++ P TS+
Sbjct: 77  RLEDSISSLQRQEDSLKTKYELQEARLDMLKNRPATSA 114


>SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 337

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 314 QNKRRTSTCPNRRWPTLTS 370
           Q KR TS C +  WP L S
Sbjct: 313 QVKRETSDCYHETWPMLQS 331


>SPBC19C2.11c |||mitochondrial outer membrane protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +1

Query: 124 LIIFNKDQGLTRAFRNIP 177
           +++F+K +G+T  FRN P
Sbjct: 134 VLVFSKQKGITVVFRNDP 151


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,682,417
Number of Sequences: 5004
Number of extensions: 30628
Number of successful extensions: 101
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)