Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0143
(432 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 149 1e-36
07_01_0578 + 4295386-4296489,4297394-4297507 146 7e-36
03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021,510... 31 0.40
02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216 30 0.92
01_01_0328 - 2664412-2664535,2665388-2665465,2667784-2667895,266... 30 0.92
01_01_0612 + 4565422-4565481,4565597-4565671,4565760-4566332,456... 29 2.1
02_04_0073 - 19471254-19472681 28 2.8
03_03_0125 - 14630078-14630136,14630197-14631160 28 3.7
03_03_0122 - 14617879-14618871 28 3.7
01_06_0160 - 27095727-27096008,27096164-27096652,27096983-270971... 28 3.7
08_01_0895 - 8806113-8806220,8806642-8806712,8806969-8807155,880... 27 6.5
03_06_0721 - 35742380-35742736,35743206-35743398,35743497-357435... 27 6.5
10_08_0912 - 21520088-21520426,21520534-21520674,21521235-215212... 27 8.6
02_05_0410 + 28744716-28744841,28745361-28745965,28746151-287462... 27 8.6
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 149 bits (360), Expect = 1e-36
Identities = 70/135 (51%), Positives = 94/135 (69%), Gaps = 1/135 (0%)
Frame = +1
Query: 28 AWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQG-LTRAFRNIPGVEXXXXXX 204
A++D K S +RAGKGKMRNRR I RKGPLI++ + + +AFRN+PGV+
Sbjct: 179 AYADAEKTKDSVAIRAGKGKMRNRRYINRKGPLIVYGTEGSKVVKAFRNLPGVDVANVER 238
Query: 205 XXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLK 384
APGGHLGRFVIWT+ AF +LD ++G + TP+ +KK F LP+PKMAN DL+RL+
Sbjct: 239 LNLLDLAPGGHLGRFVIWTECAFKKLDEVYGGFDTPALKKKGFVLPRPKMANADLSRLIN 298
Query: 385 SDEIRKVLRAPNKRV 429
SDE++ V++ NK V
Sbjct: 299 SDEVQSVVKPINKEV 313
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 146 bits (354), Expect = 7e-36
Identities = 70/144 (48%), Positives = 97/144 (67%), Gaps = 1/144 (0%)
Frame = +1
Query: 1 AAGIRHEAQAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQG-LTRAFRNIP 177
A I + A++D K S +R GKGKMRNRR I RKGPLI++ + + +AFRN+P
Sbjct: 171 AIKILKQVGAYADAEKAKDSVGIRPGKGKMRNRRYINRKGPLIVYGTEGSKIVKAFRNLP 230
Query: 178 GVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMA 357
GV+ APGGHLGRFVIWT+SAF +L+ ++G+++ PS +KK F LP+PKMA
Sbjct: 231 GVDVANVERLNLLDLAPGGHLGRFVIWTESAFKKLEEVYGTFEAPSLKKKGFILPRPKMA 290
Query: 358 NTDLTRLLKSDEIRKVLRAPNKRV 429
N DL R++ SDE++ V++ NK V
Sbjct: 291 NADLGRIINSDEVQSVVKPLNKEV 314
>03_02_0027 +
5100865-5100878,5102241-5102708,5102795-5103021,
5103670-5104577
Length = 538
Score = 31.1 bits (67), Expect = 0.40
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Frame = +2
Query: 209 TS*SWLREVILDVSSSGLSPHSAGLTPYSGHGRHHQNKRR----TSTCPNRRWPTLTSHV 376
+S S+LR + LD+SSS +P S+ H HHQ + S+ P WP
Sbjct: 376 SSSSFLRCLGLDMSSSSSAPPSSSGQQQQHHHHHHQETMQVPLPASSLP--EWPPRLQPE 433
Query: 377 FSSLMRSGRSSVLPTNA 427
S ++ SG LP +A
Sbjct: 434 PSPMLSSGLGLGLPYDA 450
>02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216
Length = 1030
Score = 29.9 bits (64), Expect = 0.92
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = +1
Query: 223 APG--GHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANT 363
APG G GR+V+ SA LDP F SW S++ K F++ + A++
Sbjct: 670 APGVDGCSGRYVV-AASAGNALDPGFCSWDYYSREAKAFHIEEISHASS 717
>01_01_0328 - 2664412-2664535,2665388-2665465,2667784-2667895,
2668344-2668410,2668473-2668562,2668672-2668787,
2668999-2671924
Length = 1170
Score = 29.9 bits (64), Expect = 0.92
Identities = 18/69 (26%), Positives = 34/69 (49%)
Frame = -1
Query: 216 QEVQLVNIQELHTGDVAESASQTLILVEDYEGSLTLDTTTVAHFTLTSTKTLRLVHLKDI 37
Q L++++ LH D + + L+ED + ++ + T V + +T+ LV+LK
Sbjct: 937 QAENLISLKRLHMVDCQNAKQFRMCLLEDQQLAVDVVTVVVESRVARAKETVVLVYLKCY 996
Query: 36 RPCLSLVPN 10
R L+ N
Sbjct: 997 RKQLNFCGN 1005
>01_01_0612 +
4565422-4565481,4565597-4565671,4565760-4566332,
4566438-4566551,4566676-4567377
Length = 507
Score = 28.7 bits (61), Expect = 2.1
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -1
Query: 288 GVKPAECGLSPDDETSKMTSRSQLQEVQLVNIQELHTGDVA 166
G+ A G++ DD+ K SR L + ++N+ +GD A
Sbjct: 147 GLSCARGGVASDDDDDKQASRRALPPMPVLNLSSDSSGDAA 187
>02_04_0073 - 19471254-19472681
Length = 475
Score = 28.3 bits (60), Expect = 2.8
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +2
Query: 263 SPHSAGLTPYSGHGRHHQNKRRTSTCPNRRWPTLTSHVFSSLMR 394
+P G +P S HG HH++++ T N + L V ++R
Sbjct: 20 APRPRGASPLSSHGHHHRSRKIHRTFNNVKITVLCGLVTILVLR 63
>03_03_0125 - 14630078-14630136,14630197-14631160
Length = 340
Score = 27.9 bits (59), Expect = 3.7
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = +1
Query: 241 GRFVIWTQSAFGRL-DPLFGSWK 306
G FV+W AFG L L G+WK
Sbjct: 127 GGFVVWADRAFGPLAGSLLGTWK 149
>03_03_0122 - 14617879-14618871
Length = 330
Score = 27.9 bits (59), Expect = 3.7
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = +1
Query: 241 GRFVIWTQSAFGRL-DPLFGSWK 306
G FV+W AFG L L G+WK
Sbjct: 124 GGFVVWADRAFGPLAGSLLGTWK 146
>01_06_0160 -
27095727-27096008,27096164-27096652,27096983-27097132,
27097656-27097920,27097995-27098274,27100311-27100388,
27100597-27101240,27101334-27101412,27101489-27101612,
27101782-27101882,27102870-27103068
Length = 896
Score = 27.9 bits (59), Expect = 3.7
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -1
Query: 273 ECGLSPDDETSKMTSRSQLQEVQ 205
+CG+ PD+ S++ S+ QEV+
Sbjct: 51 DCGMDPDEAVSRLLSQDTFQEVK 73
>08_01_0895 -
8806113-8806220,8806642-8806712,8806969-8807155,
8807473-8807603,8807679-8807811,8808124-8808242,
8808751-8809039,8809150-8809272,8809300-8809323,
8810016-8810072,8810148-8810255
Length = 449
Score = 27.1 bits (57), Expect = 6.5
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -1
Query: 78 TSTKTLRLVHLKDIRPCLSLVPNSCS 1
TS K LR++ +++ CL VPNSCS
Sbjct: 58 TSRKILRILDSRNLS-CLFQVPNSCS 82
>03_06_0721 -
35742380-35742736,35743206-35743398,35743497-35743552,
35745951-35746727
Length = 460
Score = 27.1 bits (57), Expect = 6.5
Identities = 10/31 (32%), Positives = 23/31 (74%)
Frame = -1
Query: 255 DDETSKMTSRSQLQEVQLVNIQELHTGDVAE 163
D E+S + ++ QL E +L+N++++ GD+++
Sbjct: 286 DVESSGVPAKLQLLEQELINLEKIGNGDLSK 316
>10_08_0912 -
21520088-21520426,21520534-21520674,21521235-21521294,
21521394-21521493,21521591-21521904,21522253-21522621,
21522993-21523104,21523627-21523787
Length = 531
Score = 26.6 bits (56), Expect = 8.6
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +2
Query: 251 SSGLSPHSAGLTPYSGHGRHHQNKRRTSTCPNRRWPTLTSHVFSSLMRSGRS-SVLPT 421
SSGLS A S R H + ++ C +++ P + +S+ SGRS S+L T
Sbjct: 133 SSGLSS-PAHTKSISSRTRRHPSIISSAFCSSKKLPLQPFQIMTSVSESGRSKSMLKT 189
>02_05_0410 +
28744716-28744841,28745361-28745965,28746151-28746270,
28746597-28746737,28748626-28749370
Length = 578
Score = 26.6 bits (56), Expect = 8.6
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +2
Query: 248 SSSGLSPHSAGLTPYSGHGRHHQNKRRTSTCPN 346
SSSG S S + +SG+ HH K PN
Sbjct: 394 SSSGASSASKNNSSHSGYHHHHHQKPLVKAEPN 426
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,906,848
Number of Sequences: 37544
Number of extensions: 239481
Number of successful extensions: 682
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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