Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0143
         (432 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)                93   7e-20
SB_54601| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.6  
SB_23350| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  
SB_22853| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_33997| Best HMM Match : Astacin (HMM E-Value=0)                     27   8.7  
SB_15115| Best HMM Match : ResIII (HMM E-Value=0.24)                   27   8.7  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score = 93.5 bits (222), Expect = 7e-20
 Identities = 42/73 (57%), Positives = 51/73 (69%)
 Frame = +1

Query: 28  AWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXXXXXX 207
           A+ D+ K   S+++RAGKGKMRNRR + RKGPLII+N DQGL +AFRN+PGVE       
Sbjct: 173 AYEDVEKCIDSKKIRAGKGKMRNRRTVMRKGPLIIYNNDQGLRQAFRNLPGVELQHVDRL 232

Query: 208 XXXXXAPGGHLGR 246
                 PGGHLGR
Sbjct: 233 NLLKLCPGGHLGR 245


>SB_54601| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1718

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +1

Query: 307 TPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVI 432
           TP++Q   F   + +++N D++RL  S+    + ++ N RVI
Sbjct: 802 TPTEQDAEFTANEAEVSNQDISRLSSSEPSPIIPKSINNRVI 843


>SB_23350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 704

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -1

Query: 153 QTLILVEDYEGSLTLDTTTVAHFTLTSTKTL 61
           Q LIL+  Y   + L+T+++  F+L S KT+
Sbjct: 235 QELILIPYYTEKVALETSSLIEFSLLSAKTI 265


>SB_22853| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 134

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -1

Query: 252 DETSKMTSRSQLQEVQLVNIQE-LHTGDVA 166
           DETS  +SRS++Q   LV   E LH  D++
Sbjct: 39  DETSSPSSRSRIQASSLVKTNEFLHARDIS 68


>SB_33997| Best HMM Match : Astacin (HMM E-Value=0)
          Length = 507

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 305 RHHQNKRRTSTCPNRRWPTLT 367
           +HH+ KR  ++  N++WP  T
Sbjct: 223 KHHRGKRAAASSDNQKWPRNT 243


>SB_15115| Best HMM Match : ResIII (HMM E-Value=0.24)
          Length = 1179

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +3

Query: 240 WTFRHLDSVRIRQA*PLIRVMEDTIKTKEELQPAPTEDGQH*P 368
           W     +S+R     PL+   E  +  + EL+P P ++G+  P
Sbjct: 139 WVSHERESLRANAVLPLVARDEYLVYVRYELRPLPEQNGEPGP 181


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,442,955
Number of Sequences: 59808
Number of extensions: 256089
Number of successful extensions: 956
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 822495283
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)