Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0143
         (432 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   145   1e-35
AF016679-4|AAB66158.1|  430|Caenorhabditis elegans Hypothetical ...    29   1.9  
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr...    28   2.5  
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr...    28   2.5  
U23511-3|AAC46790.1|  636|Caenorhabditis elegans Small protein 6...    28   3.3  
AF104017-1|AAD12261.1|  636|Caenorhabditis elegans serine-threon...    28   3.3  
AF100656-6|AAF99961.1|  240|Caenorhabditis elegans Hypothetical ...    27   5.8  
Z68298-10|CAA92607.1| 1034|Caenorhabditis elegans Hypothetical p...    27   7.7  
U80453-11|AAN63452.2|  503|Caenorhabditis elegans Hypothetical p...    27   7.7  
U80453-10|AAN63453.1|  489|Caenorhabditis elegans Hypothetical p...    27   7.7  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  145 bits (352), Expect = 1e-35
 Identities = 66/135 (48%), Positives = 94/135 (69%), Gaps = 1/135 (0%)
 Frame = +1

Query: 31  WSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXX 210
           W+DI KVY S+R RAGKGK+RNR+  Q+ GP++I+ +D    RAFRNIPGV+        
Sbjct: 176 WADIEKVYNSKRNRAGKGKLRNRQHKQKLGPVVIYGQDAECARAFRNIPGVDVMNVERLN 235

Query: 211 XXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQ-KKNFNLPQPKMANTDLTRLLKS 387
               APGGHLGR +IWT+SAF +LD ++G+    S Q KK +++P P MAN+D +R+++S
Sbjct: 236 LLKLAPGGHLGRLIIWTESAFKKLDTIYGTTVANSSQLKKGWSVPLPIMANSDFSRIIRS 295

Query: 388 DEIRKVLRAPNKRVI 432
           +E+ K +RAP K  +
Sbjct: 296 EEVVKAIRAPKKNPV 310


>AF016679-4|AAB66158.1|  430|Caenorhabditis elegans Hypothetical
           protein T28C12.3 protein.
          Length = 430

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = -1

Query: 225 SQLQEVQLVNIQELHTG--DVAESASQTLILVEDYEGSLTLDTTTVAHFTL 79
           S L+  +   ++ LH    +  E + + L++++ +E + TL  TTVA+F+L
Sbjct: 281 SLLKHFEPETLESLHIEILEFDEDSVKELVILDQWEEAKTLSLTTVAYFSL 331


>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
            F54B3.1b protein.
          Length = 3394

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 15/64 (23%), Positives = 26/64 (40%)
 Frame = +1

Query: 241  GRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN 420
            G F+  T    G     F   +TP   +  +N   P+ A      +++  +IR +L  P 
Sbjct: 2789 GEFLKKTDLKLGLASTKFHEIRTPFFLRSEWNKDAPRRAGKLFDEVVRESDIRSILEEPL 2848

Query: 421  KRVI 432
            K  +
Sbjct: 2849 KEFV 2852


>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
            F54B3.1a protein.
          Length = 3396

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 15/64 (23%), Positives = 26/64 (40%)
 Frame = +1

Query: 241  GRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN 420
            G F+  T    G     F   +TP   +  +N   P+ A      +++  +IR +L  P 
Sbjct: 2789 GEFLKKTDLKLGLASTKFHEIRTPFFLRSEWNKDAPRRAGKLFDEVVRESDIRSILEEPL 2848

Query: 421  KRVI 432
            K  +
Sbjct: 2849 KEFV 2852


>U23511-3|AAC46790.1|  636|Caenorhabditis elegans Small protein 6
           protein.
          Length = 636

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
 Frame = -1

Query: 252 DETSKMTSRS--QLQEVQLVNIQELHTGDV-AESASQT-LILVEDYEGSLTLDTTTVAHF 85
           DE S    R   Q   +   NI +    D+ +E  S T ++L+ DY    +L        
Sbjct: 298 DEDSWKNERDVYQTNMINHENILQFVAADIWSEEDSMTKMLLITDYHELGSLSDYLCREE 357

Query: 84  TLTSTKTLRLVH 49
           TLT+ + LRL+H
Sbjct: 358 TLTTDEALRLIH 369


>AF104017-1|AAD12261.1|  636|Caenorhabditis elegans serine-threonine
           kinase SMA-6 protein.
          Length = 636

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
 Frame = -1

Query: 252 DETSKMTSRS--QLQEVQLVNIQELHTGDV-AESASQT-LILVEDYEGSLTLDTTTVAHF 85
           DE S    R   Q   +   NI +    D+ +E  S T ++L+ DY    +L        
Sbjct: 298 DEDSWKNERDVYQTNMINHENILQFVAADIWSEEDSMTKMLLITDYHELGSLSDYLCREE 357

Query: 84  TLTSTKTLRLVH 49
           TLT+ + LRL+H
Sbjct: 358 TLTTDEALRLIH 369


>AF100656-6|AAF99961.1|  240|Caenorhabditis elegans Hypothetical
           protein F49F1.7 protein.
          Length = 240

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 23/87 (26%), Positives = 34/87 (39%)
 Frame = -1

Query: 270 CGLSPDDETSKMTSRSQLQEVQLVNIQELHTGDVAESASQTLILVEDYEGSLTLDTTTVA 91
           CG     E S  T+   LQ      +Q   T    E+ ++T    +  + + T +TT   
Sbjct: 125 CGNPSTKEASVTTTNGHLQIGTTRRLQATQTTKSTET-TETTETTKAIKTTKTTETTKAT 183

Query: 90  HFTLTSTKTLRLVHLKDIRPCLSLVPN 10
             T  ST T++    K   PC    PN
Sbjct: 184 KTTTPST-TVKTTTTKPKPPCTDSSPN 209


>Z68298-10|CAA92607.1| 1034|Caenorhabditis elegans Hypothetical
           protein F44D12.1 protein.
          Length = 1034

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
 Frame = +2

Query: 242 DVSSSGLSPHSAGLTPYSG---HGRHHQNKRRTSTCPNRRWPTLTSHVFSSLMRSGRSSV 412
           + ++S   P+S   TP S     G+ H+     S      +PT+     SS+M S  S  
Sbjct: 532 NTTTSDARPYSMHFTPTSSTIMEGKPHRRSAVYSPSHPPVYPTIRDDSMSSVMSSSNSIR 591

Query: 413 LPTNA 427
           LP+ +
Sbjct: 592 LPSTS 596


>U80453-11|AAN63452.2|  503|Caenorhabditis elegans Hypothetical
           protein C23H3.9a protein.
          Length = 503

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
 Frame = -1

Query: 252 DETSKMTSRSQLQEVQLVNIQELHTGDVAESASQTLILVEDYE--GSLTLDTTTVAHFTL 79
           D+T++ T+     E    +    H+ DV    ++ LIL  D+      +L    V +   
Sbjct: 57  DKTTEATTTETTPEAPTTSEPRSHSRDVCPFFAEPLILANDFAFCRPASLGDCPVGYLCD 116

Query: 78  TSTKTLRLVHLKDIRPCLSLVPN 10
            S K  R +  KD R    +VPN
Sbjct: 117 QSVKLGRSICCKDTR--RGIVPN 137


>U80453-10|AAN63453.1|  489|Caenorhabditis elegans Hypothetical
           protein C23H3.9b protein.
          Length = 489

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
 Frame = -1

Query: 252 DETSKMTSRSQLQEVQLVNIQELHTGDVAESASQTLILVEDYE--GSLTLDTTTVAHFTL 79
           D+T++ T+     E    +    H+ DV    ++ LIL  D+      +L    V +   
Sbjct: 53  DKTTEATTTETTPEAPTTSEPRSHSRDVCPFFAEPLILANDFAFCRPASLGDCPVGYLCD 112

Query: 78  TSTKTLRLVHLKDIRPCLSLVPN 10
            S K  R +  KD R    +VPN
Sbjct: 113 QSVKLGRSICCKDTR--RGIVPN 133


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,586,511
Number of Sequences: 27780
Number of extensions: 183832
Number of successful extensions: 553
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)