Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0143
         (432 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...   138   1e-33
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...   138   1e-33
At4g34220.1 68417.m04862 leucine-rich repeat transmembrane prote...    29   1.4  
At2g47550.1 68415.m05934 pectinesterase family protein contains ...    28   3.1  
At4g19515.1 68417.m02871 disease resistance family protein simil...    27   4.1  
At1g64110.2 68414.m07264 AAA-type ATPase family protein contains...    27   4.1  
At1g64110.1 68414.m07263 AAA-type ATPase family protein contains...    27   4.1  
At5g56890.1 68418.m07099 protein kinase family protein contains ...    27   5.5  
At5g47330.1 68418.m05834 palmitoyl protein thioesterase family p...    27   5.5  
At3g27150.1 68416.m03396 kelch repeat-containing F-box family pr...    27   5.5  
At1g18390.1 68414.m02297 protein kinase family protein contains ...    27   5.5  
At3g22960.1 68416.m02895 pyruvate kinase, putative similar to py...    26   9.6  
At1g16210.1 68414.m01941 expressed protein ESTs gb|T04357 and gb...    26   9.6  

>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score =  138 bits (335), Expect = 1e-33
 Identities = 64/128 (50%), Positives = 88/128 (68%), Gaps = 1/128 (0%)
 Frame = +1

Query: 28  AWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQG-LTRAFRNIPGVEXXXXXX 204
           A+ D  K   S  +R GKGKMRNRR I RKGPL++F  +   + +AFRN+PGVE      
Sbjct: 182 AYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLVVFGTEGAKIVKAFRNLPGVELCHVER 241

Query: 205 XXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLK 384
                 APGGHLGRFVIWT+SAF +L+ ++GS++ PS++KK + LP+ KM N DL R++ 
Sbjct: 242 LNLLKLAPGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIIN 301

Query: 385 SDEIRKVL 408
           SDE++ V+
Sbjct: 302 SDEVQSVV 309


>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score =  138 bits (334), Expect = 1e-33
 Identities = 65/133 (48%), Positives = 89/133 (66%), Gaps = 1/133 (0%)
 Frame = +1

Query: 28  AWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQG-LTRAFRNIPGVEXXXXXX 204
           A+ D  K   S  +R GKGKMRNRR I RKGPL+++  +   + +AFRN+PGVE      
Sbjct: 181 AYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLVVYGTEGSKIVKAFRNLPGVELCHVER 240

Query: 205 XXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLK 384
                 APGGHLGRFVIWT+SAF +L+ ++GS++ PS++KK + LP+ KM N DL R++ 
Sbjct: 241 LNLLKLAPGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIIN 300

Query: 385 SDEIRKVLRAPNK 423
           SDEI+ V+    K
Sbjct: 301 SDEIQSVVNPIKK 313


>At4g34220.1 68417.m04862 leucine-rich repeat transmembrane protein
           kinase, putative protein kinase TMKL1, Arabidopsis
           thaliana, PID:E353150
          Length = 757

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 22/68 (32%), Positives = 31/68 (45%)
 Frame = -1

Query: 252 DETSKMTSRSQLQEVQLVNIQELHTGDVAESASQTLILVEDYEGSLTLDTTTVAHFTLTS 73
           DETS  TS S ++  Q V       G   + +SQT ++  D E  L LDT   A   +  
Sbjct: 421 DETS--TSESDVENQQTVQAFTRTDGGQLKQSSQTQLVTVDGETRLDLDTLLKASAYILG 478

Query: 72  TKTLRLVH 49
           T    +V+
Sbjct: 479 TTGTGIVY 486


>At2g47550.1 68415.m05934 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 560

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = -1

Query: 210 VQLVNIQELHTGDVAESASQTLILVED--YEGSLTLDTTTVAHFTLTSTKTLRLVHLKDI 37
           + +++ +    G VA  A  T+  +ED  +  SLT+D    +  T  STKTL L   +D+
Sbjct: 78  ISMIDAELDRKGKVA--AKSTVGALEDCKFLASLTMDYLLSSSQTADSTKTLSLSRAEDV 135

Query: 36  RPCLS 22
              LS
Sbjct: 136 HTFLS 140


>At4g19515.1 68417.m02871 disease resistance family protein similar
           to downy mildew resistance protein RPP5 [Arabidopsis
           thaliana] GI:6449046; contains Pfam profile PF01582: TIR
           domain
          Length = 524

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = -1

Query: 213 EVQLVNIQELHTGDVAESASQTLILVEDYEGSLTLDTTTVAHFTLTSTKTL 61
           E+  VN QE+H GD        + ++ D  GS + +T T    ++ S K L
Sbjct: 101 EIFPVNKQEMHVGDSCTITKCGVYVINDAAGSSSGNTMTPQCSSMDSLKLL 151


>At1g64110.2 68414.m07264 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family
          Length = 829

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 18/77 (23%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
 Frame = -1

Query: 258 PDDETSKMTSRSQLQ-EVQLVNIQELHTGDVAESASQTLILVEDYEGSLTLDTTTVAHF- 85
           P+DET  ++ +SQL+ ++ ++  Q+ +   + E  S+  ++ +D E     DT  ++++ 
Sbjct: 337 PEDETHLVSWKSQLERDMNMIQTQD-NRNHIMEVLSENDLICDDLESISFEDTKVLSNYI 395

Query: 84  --TLTSTKTLRLVHLKD 40
              + S  +  L++ KD
Sbjct: 396 EEIVVSALSYHLMNNKD 412


>At1g64110.1 68414.m07263 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family
          Length = 824

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 18/77 (23%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
 Frame = -1

Query: 258 PDDETSKMTSRSQLQ-EVQLVNIQELHTGDVAESASQTLILVEDYEGSLTLDTTTVAHF- 85
           P+DET  ++ +SQL+ ++ ++  Q+ +   + E  S+  ++ +D E     DT  ++++ 
Sbjct: 332 PEDETHLVSWKSQLERDMNMIQTQD-NRNHIMEVLSENDLICDDLESISFEDTKVLSNYI 390

Query: 84  --TLTSTKTLRLVHLKD 40
              + S  +  L++ KD
Sbjct: 391 EEIVVSALSYHLMNNKD 407


>At5g56890.1 68418.m07099 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 1113

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +2

Query: 266 PHSAGLTPYSGHGRHHQNKRRTSTCPNRRWPTLTSHVFSSLMRSGRSSVLP 418
           P S    P S H +HHQ +++ +  P      L  H+ S    + + S+ P
Sbjct: 335 PSSPSPPPLSSHHQHHQERKKIADSPAP--SPLPPHLISPKKSNRKGSMTP 383


>At5g47330.1 68418.m05834 palmitoyl protein thioesterase family
           protein 
          Length = 314

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = -1

Query: 162 SASQTLILVEDYEGSLTLDTTTVAHFTLTSTKTLRLVH---LKDIRPCLSLVPNS 7
           SA QT +  ED+ G  TLD      F   + + +R+V    +K + P L   P+S
Sbjct: 246 SAQQTKLYTEDWIGLKTLDDAGKVKFVSVAGEHIRMVDEDVVKHVVPYLQDQPSS 300


>At3g27150.1 68416.m03396 kelch repeat-containing F-box family
           protein contains Pfam:PF01344 Kelch motif, Pfam:PF00646
           F-box domain
          Length = 422

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +1

Query: 349 KMANTDLTRLLKSDEIRKVLR 411
           K+ N   +RLLKSDEI KV R
Sbjct: 95  KLLNKGFSRLLKSDEIFKVRR 115


>At1g18390.1 68414.m02297 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 605

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
 Frame = -1

Query: 192 QELHTGDVAESASQTLILVEDYEGSLTLDTTTVAHFTLTSTKTLRLVHL---KDIRPCLS 22
           QE++  ++A    Q   L +  + SL  DT T    T+ +   L    L   KD+RPC+S
Sbjct: 502 QEINLSNMAVVKIQNHELRDMVDPSLGFDTDTRVRQTVIAVAELAFQCLQSDKDLRPCMS 561

Query: 21  LVPNS 7
            V ++
Sbjct: 562 HVQDT 566


>At3g22960.1 68416.m02895 pyruvate kinase, putative similar to
           pyruvate kinase isozyme A, chloroplast precursor
           [Ricinus communis] SWISS-PROT:Q43117
          Length = 596

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +2

Query: 284 TPYSGHGRHHQNKRRTSTCPNRRWPTLTSHVFSSLMRSGRSSVLP 418
           TP+  H  H Q  R  S+   RR+P LT+  ++S+  S  SS  P
Sbjct: 13  TPHLLHLPHSQFNRPLSSISFRRFP-LTTIKYTSIRASSSSSPSP 56


>At1g16210.1 68414.m01941 expressed protein ESTs gb|T04357 and
           gb|AA595092 come from this gene
          Length = 234

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = +1

Query: 304 KTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKR 426
           K P K+     +P PK+   +L R  + D++    +A + +
Sbjct: 85  KKPDKKANRVTVPVPKVTEAELIRRREEDQVALAKKAEDSK 125


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,211,169
Number of Sequences: 28952
Number of extensions: 178520
Number of successful extensions: 562
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 685039728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)