Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0142
         (584 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    36   0.93 
UniRef50_UPI00004989C2 Cluster: hypothetical protein 124.t00009;...    32   8.7  

>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 35.5 bits (78), Expect = 0.93
 Identities = 13/18 (72%), Positives = 15/18 (83%)
 Frame = +1

Query: 85  AGW*YLPVRTHKRSYHQF 138
           A W YLP RTHKRSYH++
Sbjct: 569 AEWWYLPARTHKRSYHRY 586


>UniRef50_UPI00004989C2 Cluster: hypothetical protein 124.t00009;
           n=1; Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
           protein 124.t00009 - Entamoeba histolytica HM-1:IMSS
          Length = 602

 Score = 32.3 bits (70), Expect = 8.7
 Identities = 17/33 (51%), Positives = 22/33 (66%)
 Frame = +2

Query: 401 LLVTIE*IILEVTVNNSFQCIYLSKFICCKNIK 499
           LL  IE  I+E+T+NN+FQ   L+KFI    IK
Sbjct: 108 LLSEIENKIIELTINNNFQLFNLNKFIKLIKIK 140


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 506,052,371
Number of Sequences: 1657284
Number of extensions: 8984029
Number of successful extensions: 17081
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 16673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17080
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 40820699206
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)