Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0142
         (584 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    29   0.66 
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    25   6.2  

>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 28.7 bits (61), Expect = 0.66
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 96  IPTRADSQEVLPPVFYNNIISVNTQMFLT*TKCWP 200
           IP  A S + +PP F+ N      ++FL   K WP
Sbjct: 510 IPLIAISSDQVPPTFFTNNDDFKDKVFLAGIKRWP 544


>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 420 YSIVTNRKLIKNLRFLCIKIKTR 352
           YS++ N KL  N +  CI+I+ R
Sbjct: 47  YSMINNVKLCSNEKSFCIRIQCR 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,156,770
Number of Sequences: 5004
Number of extensions: 40210
Number of successful extensions: 73
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)