Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0142
         (584 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1313 - 29252335-29252446,29253430-29253671,29253770-292538...    31   0.89 
11_06_0730 - 26728241-26729335,26729998-26730660                       29   2.1  
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353...    29   3.6  
05_03_0484 + 14599786-14602197                                         28   6.3  

>06_03_1313 - 29252335-29252446,29253430-29253671,29253770-29253848,
            29254991-29255130,29255262-29255571,29255810-29255952,
            29256106-29256306,29256453-29256581,29256921-29257199,
            29258036-29259720,29261255-29261764,29261901-29262108,
            29264347-29264458,29264594-29264763
          Length = 1439

 Score = 30.7 bits (66), Expect = 0.89
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 323  KLNRLNCPITDNLIYIEINFDIIQCCSSFFFWSLW 219
            KL  + CPI D+LI + + +    CC+       W
Sbjct: 1249 KLGEIICPIKDDLIMVHLQYSCSHCCTFMVSGRRW 1283


>11_06_0730 - 26728241-26729335,26729998-26730660
          Length = 585

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 299 ITDNLIYIEINFDIIQCCSSFFFWSL 222
           + + L  +   FD I+CC S F WS+
Sbjct: 171 LLERLSCLSRQFDFIRCCQSLFIWSV 196


>09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,
            3536083-3536226,3536974-3537375,3537499-3537721,
            3537830-3542368,3542480-3542599,3543005-3543038,
            3543922-3544102,3544198-3544815,3545022-3551098,
            3551139-3551304,3551508-3551614,3552056-3552178,
            3553417-3553642
          Length = 5100

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = -3

Query: 498  FIFLQQMNFDK*IH*NELFTVTSRIIYSIVTNRKLIKNLRFL 373
            F F+ Q++ D+  H  ELF  T +++ ++V N  L+  L+FL
Sbjct: 1455 FHFIAQLSTDE-SHFKELFEKTLKLMENMVGNEGLLHTLKFL 1495


>05_03_0484 + 14599786-14602197
          Length = 803

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 4/30 (13%)
 Frame = -3

Query: 141 KKLVVGPLVSPH--G*VSPPCL--FLPCSR 64
           KK ++G ++ PH  G +SPPCL  F  C++
Sbjct: 692 KKGMLGKIIDPHLHGEISPPCLRMFADCAK 721


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,900,209
Number of Sequences: 37544
Number of extensions: 221802
Number of successful extensions: 378
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)