Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0142
         (584 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL022289-2|CAA18374.1|  478|Caenorhabditis elegans Hypothetical ...    28   4.2  
Z93374-8|CAB07555.1|  359|Caenorhabditis elegans Hypothetical pr...    27   7.4  
AF024503-3|AAG24098.3|  331|Caenorhabditis elegans Serpentine re...    27   9.8  

>AL022289-2|CAA18374.1|  478|Caenorhabditis elegans Hypothetical
           protein ZK1225.2 protein.
          Length = 478

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 15/70 (21%), Positives = 32/70 (45%)
 Frame = -3

Query: 534 SLVMSYHRNENRFIFLQQMNFDK*IH*NELFTVTSRIIYSIVTNRKLIKNLRFLCIKIKT 355
           +L+M Y+     ++ + +  FD  +       +  R+I S     ++ KN R+ C + +T
Sbjct: 17  TLIMLYNTMWTTYLHISRPRFDTTLSTERKLFILERMIESFRKGGQMCKNERYYCKRPET 76

Query: 354 RVIICSIKIR 325
             + C   +R
Sbjct: 77  AHVDCGRVLR 86


>Z93374-8|CAB07555.1|  359|Caenorhabditis elegans Hypothetical
           protein C06C6.5a protein.
          Length = 359

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 460 TLKRIIYRNLKNYLFDSN*QEI 395
           T++ +I+R LKNY  D N  EI
Sbjct: 292 TIRNLIFRELKNYQTDKNFDEI 313


>AF024503-3|AAG24098.3|  331|Caenorhabditis elegans Serpentine
           receptor, class j protein6 protein.
          Length = 331

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 323 YRILILHIITRVFILMHKNL 382
           Y +LI+H + R FIL H +L
Sbjct: 101 YALLIIHFVYRYFILFHPHL 120


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,784,275
Number of Sequences: 27780
Number of extensions: 220367
Number of successful extensions: 443
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)