Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0138
         (590 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    23   2.6  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    23   2.6  
AF017414-2|AAB70261.1|  150|Tribolium castaneum abdominal-A prot...    23   2.6  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    23   2.6  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    22   4.5  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    21   5.9  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    21   5.9  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           21   5.9  

>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +2

Query: 404 PVDGLQQYCFSEHHFHMGERSQATSQV 484
           P D +  Y   +HH H G    A S V
Sbjct: 63  PADSMVNYTLGQHH-HNGAAVSAASSV 88


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +2

Query: 404 PVDGLQQYCFSEHHFHMGERSQATSQV 484
           P D +  Y   +HH H G    A S V
Sbjct: 122 PADSMVNYTLGQHH-HNGAAVSAASSV 147


>AF017414-2|AAB70261.1|  150|Tribolium castaneum abdominal-A
           protein.
          Length = 150

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +2

Query: 404 PVDGLQQYCFSEHHFHMGERSQATSQV 484
           P D +  Y   +HH H G    A S V
Sbjct: 63  PADSMVNYTLGQHH-HNGAAVSAASSV 88


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +2

Query: 404 PVDGLQQYCFSEHHFHMGERSQATSQV 484
           P D +  Y   +HH H G    A S V
Sbjct: 122 PADSMVNYTLGQHH-HNGAAVSAASSV 147


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 459 RDHRLHHKYTDTDADPHNATRGFFFSHIGW 548
           R+H    + T+T A   N T  F+ S  GW
Sbjct: 191 RNHLFLVRRTETLAQILNQTVNFYNSAFGW 220


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -1

Query: 584 SNFHHWMFSHQQPADV*EKKTSRSIMR 504
           +NF+ WM +H   +    K+T ++  R
Sbjct: 166 ANFYPWMKAHGDSSATGNKRTRQTYTR 192


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -1

Query: 584 SNFHHWMFSHQQPADV*EKKTSRSIMR 504
           +NF+ WM +H   +    K+T ++  R
Sbjct: 166 ANFYPWMKAHGDSSATGNKRTRQTYTR 192


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -1

Query: 584 SNFHHWMFSHQQPADV*EKKTSRSIMR 504
           +NF+ WM +H   +    K+T ++  R
Sbjct: 166 ANFYPWMKAHGDSSATGNKRTRQTYTR 192


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,094
Number of Sequences: 336
Number of extensions: 3044
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14830622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)