Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0138
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...   122   3e-29
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy...    29   0.38 
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    28   1.2  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    27   2.7  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    26   3.6  
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|...    25   6.2  
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po...    25   8.3  

>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score =  122 bits (295), Expect = 3e-29
 Identities = 50/111 (45%), Positives = 73/111 (65%)
 Frame = +3

Query: 237 LHIAGLYGLYLCFTSAKLATSVFAIVLFFLGNFGITAGAHRLWSHNGYKVKLPLEILLMV 416
           L +  +YG++   T  +  T +FAI+ +     GITAG HRLWSH  YK K PLE  L  
Sbjct: 73  LPMIAIYGVFT--TPLQTKTLIFAIIYYAYSGLGITAGYHRLWSHRAYKAKKPLEYFLAA 130

Query: 417 FNSIAFQNTIFTWVRDHRLHHKYTDTDADPHNATRGFFFSHIGWLLVRKHP 569
             + AF+ +I  W RDHR HH+YTDTD DP+N  +GF+++H+GW+++ ++P
Sbjct: 131 GGAAAFEGSIRWWSRDHRAHHRYTDTDKDPYNVKKGFWYAHVGWMIILQNP 181


>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 29.5 bits (63), Expect = 0.38
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -1

Query: 470 PVISHPCENGVLKSNTVEDHQQDLEGQFDFVT 375
           P I    EN + +SNTVE+  +++E QF+ V+
Sbjct: 297 PEIHESSENYLSRSNTVENEPENIEKQFESVS 328


>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 471

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 108 SVDKTNETEYLKDNHVDYEKLIAPQASPIKHKIVVM 215
           S+   N  EYL D+ V+  KL   +  P+K K++ +
Sbjct: 28  SLTSINSAEYLYDSFVEISKLPLEKKLPLKWKLITV 63


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 552  TTSRCVRKKNLS*HYEGLHQC 490
            T +  V KKN+S H+EG+ +C
Sbjct: 1538 TDALLVLKKNISMHFEGVEEC 1558


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
           transporter Bfr1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1530

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +3

Query: 297 SVFAIVLFFLGNFGITAGAHRLWSH 371
           SVF+IVL+FL N   TAG    W++
Sbjct: 632 SVFSIVLYFLTNLKRTAGG--FWTY 654


>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 643

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 337 PKFPRKNNTIAKTDVANFAEVK 272
           P FP +N T  + +VANF  +K
Sbjct: 205 PAFPDENITALQKNVANFTSIK 226


>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 639

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = +3

Query: 102 PNSVDKTNETEYLKDNHVDYE---KLIAPQASPIKHKIVVM 215
           PN V   N +  +  NH+D E   KLI  +   ++ +I V+
Sbjct: 589 PNQVSMPNISNIVSTNHLDVETQMKLIMDENQRLREQIAVL 629


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,384,486
Number of Sequences: 5004
Number of extensions: 48333
Number of successful extensions: 123
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)