Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0138
         (590 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25798| Best HMM Match : FA_desaturase (HMM E-Value=0)              137   7e-33
SB_6574| Best HMM Match : eIF-6 (HMM E-Value=1.60028e-42)              29   2.8  
SB_19956| Best HMM Match : Vps55 (HMM E-Value=0.65)                    27   8.7  
SB_4353| Best HMM Match : Vps55 (HMM E-Value=0.65)                     27   8.7  

>SB_25798| Best HMM Match : FA_desaturase (HMM E-Value=0)
          Length = 268

 Score =  137 bits (331), Expect = 7e-33
 Identities = 55/86 (63%), Positives = 69/86 (80%)
 Frame = +3

Query: 333 FGITAGAHRLWSHNGYKVKLPLEILLMVFNSIAFQNTIFTWVRDHRLHHKYTDTDADPHN 512
           +G+T GAHRLW+H  +K K PL +++M+ NS+A QN IF W RDHR+HHKY++TDADPHN
Sbjct: 18  YGVTIGAHRLWAHRTFKAKWPLRLVIMLMNSMAAQNDIFEWSRDHRVHHKYSETDADPHN 77

Query: 513 ATRGFFFSHIGWLLVRKHPMVKIAGK 590
           A RGFFFSH+GWL+ RKHP V   GK
Sbjct: 78  AKRGFFFSHVGWLMQRKHPDVIRKGK 103


>SB_6574| Best HMM Match : eIF-6 (HMM E-Value=1.60028e-42)
          Length = 618

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +3

Query: 213 MNVIRFSYLHIAGLYGLYLCFTSAKLATSVFAI 311
           MN  +F YL++ G+ GL+  F +A ++  VF +
Sbjct: 284 MNGKKFKYLYVTGVAGLFWGFLAAAVSCCVFYV 316


>SB_19956| Best HMM Match : Vps55 (HMM E-Value=0.65)
          Length = 402

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 213 MNVIRFSYLHIAGLYGLYLCFTSAKLATSVFAI 311
           MN   F YL++ G+ GL+  F +  ++  VF +
Sbjct: 126 MNGTEFKYLYVTGVAGLFWGFLATAVSCCVFYV 158


>SB_4353| Best HMM Match : Vps55 (HMM E-Value=0.65)
          Length = 336

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 213 MNVIRFSYLHIAGLYGLYLCFTSAKLATSVFAI 311
           MN   F YL++ G+ GL+  F +  ++  VF +
Sbjct: 126 MNGTEFKYLYVTGVAGLFWGFLATAVSCCVFYV 158


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,486,801
Number of Sequences: 59808
Number of extensions: 356837
Number of successful extensions: 911
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)