Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0137
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23511-7|AAC46795.1|  435|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AL117204-8|CAB55123.1|  205|Caenorhabditis elegans Hypothetical ...    29   3.1  
U00031-5|AAP68960.1|  534|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z19155-4|CAA79560.3|  844|Caenorhabditis elegans Hypothetical pr...    28   7.2  
AL023816-6|CAA19435.1|  341|Caenorhabditis elegans Hypothetical ...    27   9.5  
AL022274-3|CAA18359.1|  341|Caenorhabditis elegans Hypothetical ...    27   9.5  

>U23511-7|AAC46795.1|  435|Caenorhabditis elegans Hypothetical
           protein C32D5.7 protein.
          Length = 435

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
 Frame = +3

Query: 285 IYSNIYKILFSSVI--YFSDF-CTKVIYHPYVY 374
           + S I+  +F +V+  YF  F  T VIYHPYV+
Sbjct: 289 VVSTIFLYVFDAVVILYFIAFPLTTVIYHPYVH 321


>AL117204-8|CAB55123.1|  205|Caenorhabditis elegans Hypothetical
           protein Y116A8C.17 protein.
          Length = 205

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -1

Query: 668 SNAKPQRHSFILQTSENTHEIRNSVEKCRP 579
           S     +HS ILQ +E+ H++ +++  C P
Sbjct: 43  STGSSDQHSVILQENESAHKLSSAIANCDP 72


>U00031-5|AAP68960.1|  534|Caenorhabditis elegans Hypothetical
           protein B0361.11 protein.
          Length = 534

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 114 FSFSCVLNFNTFVNSSMFIINIKILNYQNDCLY 212
           F++  V   N F +SSM+I++   LN +  C Y
Sbjct: 52  FTYVLVQTLNFFYSSSMYIMSFVQLNLEKQCEY 84


>Z19155-4|CAA79560.3|  844|Caenorhabditis elegans Hypothetical
           protein F54G8.5 protein.
          Length = 844

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/58 (25%), Positives = 30/58 (51%)
 Frame = +3

Query: 18  IISLNNH*QY*VLSISQPTSRNILGRSIDTVTFSFSCVLNFNTFVNSSMFIINIKILN 191
           +I  +N  +  +L +++P  ++ L  +I     SF       TFVN+  F++ + IL+
Sbjct: 746 VIQRDNRLEKCLLVMTEPILQSALSTAIGVSLLSFVHSYIVRTFVNTVFFVVGLGILH 803


>AL023816-6|CAA19435.1|  341|Caenorhabditis elegans Hypothetical
           protein T05G11.7 protein.
          Length = 341

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +1

Query: 232 LYIFLMYYNIFELCNVLKFILTYIKYYF 315
           +Y+FLM  +I +LC +   I+  +++Y+
Sbjct: 56  IYLFLMGISICDLCRLTSCIIESLRFYY 83


>AL022274-3|CAA18359.1|  341|Caenorhabditis elegans Hypothetical
           protein T05G11.7 protein.
          Length = 341

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +1

Query: 232 LYIFLMYYNIFELCNVLKFILTYIKYYF 315
           +Y+FLM  +I +LC +   I+  +++Y+
Sbjct: 56  IYLFLMGISICDLCRLTSCIIESLRFYY 83


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,139,451
Number of Sequences: 27780
Number of extensions: 281571
Number of successful extensions: 625
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)