Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0136
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom...    27   2.5  
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch...    27   2.5  
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|...    26   4.4  
SPBC1539.09c |trp1||anthranilate synthase component II|Schizosac...    26   4.4  
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp...    26   4.4  
SPCC320.12 ||SPCC330.17c|mitochondrial inner membrane peptidase ...    26   5.8  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    26   5.8  
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    25   7.7  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     25   7.7  

>SPBC1703.13c |||inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 311

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 203 EIDLQGIFNGIHIKSVKETTLAANQWL 283
           EI   G++NG+ ++ V   TL   QWL
Sbjct: 269 EIGFSGLWNGLGVRIVMIGTLTGAQWL 295


>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 840

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = -1

Query: 496 NVPRKRSLVGIFDIRYKRPYLLRFKFDFEAFVLSDVRSVDSFV 368
           NVPR+R      +I   RP L    FDF A    D  +V S +
Sbjct: 634 NVPRQRKKKENSEIEDLRPLLQAIIFDFSAVNNLDTTAVQSLI 676


>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 456

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 463 FDIRYKRPYLLRFKF 419
           +DIRYKRPY+   K+
Sbjct: 422 YDIRYKRPYVSSLKY 436


>SPBC1539.09c |trp1||anthranilate synthase component
           II|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 759

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 15/60 (25%), Positives = 27/60 (45%)
 Frame = +2

Query: 245 SVKETTLAANQWLDDYDKWTWNTEGDFYESFNKKYGSFEAVNKAVDGPDVREDEGLKIKL 424
           +VKE        +D+YD +TWN    +  +  K+Y      N  +   ++ +   LK+ L
Sbjct: 19  AVKEVAERPIVMIDNYDSFTWNVV-QYLSNLEKRYPIMVFRNDEITVDELEKLNPLKLVL 77


>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
           subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1210

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +2

Query: 89  FVKTPMPDGLHLLTLEPWGDQILLRIENYKTGAEDSTIEIDLQGIFNGIH 238
           +V    P    +  LE WG   L  +E+Y   A  +  ++ + G++ G+H
Sbjct: 530 YVSVGSPSAPIIEFLEEWG---LETLEDYNPSASPNATKVFVNGVWLGVH 576


>SPCC320.12 ||SPCC330.17c|mitochondrial inner membrane peptidase
           Atp23|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 185

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/19 (57%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
 Frame = -3

Query: 200 WSNLRHRSCS-FRFSTGSG 147
           W+NLRH++CS  R S+ SG
Sbjct: 101 WNNLRHQACSEIRASSMSG 119


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1274

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 278  WLDDYDKWTWNTEGDFYESFNKKYG 352
            WL++ D   W  + D+Y+S N +YG
Sbjct: 1191 WLENSDPRVWQIKKDYYKSQN-QYG 1214


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +2

Query: 59  QWMRLENCKKFVKTPMPDGLHLLTLEPWGDQILL 160
           +++ L+  +KF+ + MP GL    +   GD ++L
Sbjct: 293 RFLELDVTEKFLSSAMPPGLRFPAVNILGDNLIL 326


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -2

Query: 459 ISAINDLISFALSLILRPSSSLTSGPSTALFTASKLPYFLL 337
           +S I  +I F  SL + PSS +    S     A  +P+ L+
Sbjct: 457 LSWIGYVICFVFSLNIEPSSKIVKPVSVVKRVAFNIPFLLI 497


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,827,072
Number of Sequences: 5004
Number of extensions: 59167
Number of successful extensions: 160
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)