Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0136
(682 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0025 - 25716563-25718332 31 0.84
05_03_0145 + 8881484-8882377 31 1.1
02_01_0510 + 3703715-3705040 30 2.0
02_04_0429 - 22825104-22825133,22825250-22826147,22827281-22827696 27 3.2
11_05_0059 - 18724619-18725053 29 4.5
04_04_0550 - 26187347-26188828 29 4.5
02_02_0054 - 6398829-6399047,6399470-6399676,6399858-6400557,640... 29 4.5
01_05_0339 + 21135250-21135467,21136465-21137513,21137905-21138962 29 4.5
05_01_0530 - 4567481-4569043 28 6.0
11_01_0131 + 1086916-1088127,1088213-1089469 28 7.9
02_05_0197 - 26641356-26642188,26642312-26642398,26643373-266434... 28 7.9
01_06_0486 - 29729333-29729356,29729856-29730106,29730364-297304... 28 7.9
>01_06_0025 - 25716563-25718332
Length = 589
Score = 31.1 bits (67), Expect = 0.84
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Frame = +1
Query: 76 ELQEVCQDPDA*---RAPSAHPGALGRPDPVEN 165
+ Q+V +PD R PSA PGA +P PVEN
Sbjct: 327 QAQQVTSNPDLITIKRRPSAAPGAARKPQPVEN 359
>05_03_0145 + 8881484-8882377
Length = 297
Score = 30.7 bits (66), Expect = 1.1
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +2
Query: 218 GIFNGIHIKSVKETTLAANQWLDDYDKW 301
G+F+ IH+K + A+ W+ + KW
Sbjct: 204 GLFHRIHVKKFSDGRCPASSWIQSFQKW 231
>02_01_0510 + 3703715-3705040
Length = 441
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -1
Query: 484 KRSLVGIFDIRYKRPYLLRFKFDFEAFVLSDVRSVDSF 371
++ +G+ DI ++PYL++ DFE +DV +SF
Sbjct: 335 EKKRLGVTDIYNRQPYLIKSAIDFEVCARADVFVGNSF 372
>02_04_0429 - 22825104-22825133,22825250-22826147,22827281-22827696
Length = 447
Score = 26.6 bits (56), Expect(2) = 3.2
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -1
Query: 157 QDLVAPRLQGEQMEPVRHRGLDKLLAILQPH-PLLVAEA*GVGNETTL 17
+DL+A GE +EP R R + ++ ++ P P+ A VGN+T L
Sbjct: 310 EDLLAALGFGEGVEPFRRRAVPRMYSLEAPMVPMTCINA--VGNKTPL 355
Score = 21.0 bits (42), Expect(2) = 3.2
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -1
Query: 334 AFVKVSFRIPSPLIIVVQPLVCG*RCLFYAFDMDTVEYAL 215
+F PSP + +PLV R + A DM+ + AL
Sbjct: 277 SFESAMASFPSPAVFGREPLVVTKRRDYSACDMEDLLAAL 316
>11_05_0059 - 18724619-18725053
Length = 144
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -1
Query: 448 KRPYLLRFKFDFEAFVLSDVRSVDSFVHG--LEAPVFLVEAF 329
K PY L FDF ++ + V S +F G L+APV AF
Sbjct: 97 KLPYCLVLCFDFRFYLQAPVLSCSAFDFGFYLQAPVLSCSAF 138
>04_04_0550 - 26187347-26188828
Length = 493
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +3
Query: 81 ARSLSRPRCLTGSICSPWSLGATR 152
AR RP C+ +C W+LG R
Sbjct: 118 ARPRRRPSCIIAGMCHTWALGVAR 141
>02_02_0054 -
6398829-6399047,6399470-6399676,6399858-6400557,
6400927-6401120
Length = 439
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +2
Query: 269 ANQWLDDYDKWTWNTEGDFYESFNKKYGSFEAVNKAVDGPDV 394
A +W ++ W W ++GD + + S A+N+ V G D+
Sbjct: 373 APEW--EWKNWAWRSDGDLFMNGAYFQASNGAINRKVKGSDM 412
>01_05_0339 + 21135250-21135467,21136465-21137513,21137905-21138962
Length = 774
Score = 28.7 bits (61), Expect = 4.5
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Frame = +1
Query: 40 LRPQLRAMDEVGELQEVCQDPDA*RAPSAHPGALGRPDPVENRKLQ----DRCRRFDHRN 207
LRP +++ + + E + A + S+ P + RP P +K+ D+ RR H
Sbjct: 655 LRPATSSLNNLLKRSEPAEPRQARSSHSSRPAS--RPKPSGKKKISEHDTDKSRR-PHTK 711
Query: 208 *PAGHIQRY----PYQKRKRDNASRKPVAGRL 291
A ++ + +RD ASRKPV G++
Sbjct: 712 KSATSPRKMRRLSSFASSRRDGASRKPVVGKI 743
>05_01_0530 - 4567481-4569043
Length = 520
Score = 28.3 bits (60), Expect = 6.0
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +3
Query: 96 RPRCLTGSICSPWSLGATR 152
RP C+ CSPW+ G R
Sbjct: 119 RPDCVVADSCSPWTAGVAR 137
>11_01_0131 + 1086916-1088127,1088213-1089469
Length = 822
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -1
Query: 442 PYLLRFKFDFEAFVLSDVRSVDSFVHGLEAPVFLVEAFVKVSFRI 308
P+L+ + A D R D+F++ L P+FL F +F +
Sbjct: 137 PFLVGALTGYVALSTDDKRKGDTFLNKLSFPIFLGSTFSSTAFSV 181
>02_05_0197 -
26641356-26642188,26642312-26642398,26643373-26643452,
26643948-26644120,26644227-26644308,26644623-26644758,
26644777-26644833,26644905-26645120,26645939-26646335,
26646458-26646544,26647063-26647324,26648892-26648972,
26649176-26650350
Length = 1221
Score = 27.9 bits (59), Expect = 7.9
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Frame = +3
Query: 3 AGIGTRVVSFPTPQASATSNG*GWRIARSLSRPRCLTGS-ICSPWSLGATRSC*ESKTTR 179
A +G R + AS+ + W A SL+ R + S ICSP S C + + T
Sbjct: 614 AAMGGRGGPYGRRPASSYGSCAAWS-AGSLTDHRPASPSPICSPVSSNGGEGCRDVERTN 672
Query: 180 PVP-----KIRPSKLTCRAYST 230
PVP K P++L RA S+
Sbjct: 673 PVPPRFIHKATPARLMRRARSS 694
>01_06_0486 -
29729333-29729356,29729856-29730106,29730364-29730466,
29730571-29730663,29730773-29730905,29731184-29731272,
29731385-29731553,29731930-29732016,29732388-29732506,
29732554-29732706
Length = 406
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -2
Query: 288 SSSHWFAASVVSFTLLIWIPLNMPCRSISMVESSAPV 178
SS F A V+ T LIW N R + + ++APV
Sbjct: 89 SSQRSFNAGVILVTWLIWKEHNESLRGVQSLRNTAPV 125
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,196,122
Number of Sequences: 37544
Number of extensions: 392830
Number of successful extensions: 1001
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -