Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0136
(682 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23483| Best HMM Match : Glyco_hydro_38C (HMM E-Value=0) 56 4e-08
SB_40313| Best HMM Match : Glyco_hydro_38 (HMM E-Value=0) 56 4e-08
SB_1298| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_708| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_46260| Best HMM Match : CUB (HMM E-Value=7.3e-24) 29 2.6
SB_38688| Best HMM Match : TP901-1_ORF40 (HMM E-Value=1.7) 28 6.1
SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042) 28 6.1
SB_51220| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_13056| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_2368| Best HMM Match : Patched (HMM E-Value=8.6e-08) 28 8.0
>SB_23483| Best HMM Match : Glyco_hydro_38C (HMM E-Value=0)
Length = 965
Score = 55.6 bits (128), Expect = 4e-08
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Frame = +2
Query: 56 EQWM-RLENCKKFVKTPMPDGLHLLTLEPWGDQILLRIENYKTGAEDST----IEIDLQG 220
E+W+ + + V +P +H+LTLE L+R+E+ EDS + + LQG
Sbjct: 805 EKWLAKYNSLYTGVARQLPSNVHMLTLETSNQYALIRLEHQFEADEDSKLSMPVNVSLQG 864
Query: 221 IFNGIHIKSVKETTLAANQWLDDYDKWTWN 310
+F + + V+E LAANQ L D WN
Sbjct: 865 LFTDLEVSKVEELNLAANQLLKDKHPMQWN 894
>SB_40313| Best HMM Match : Glyco_hydro_38 (HMM E-Value=0)
Length = 887
Score = 55.6 bits (128), Expect = 4e-08
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Frame = +2
Query: 56 EQWM-RLENCKKFVKTPMPDGLHLLTLEPWGDQILLRIENYKTGAEDST----IEIDLQG 220
E+W+ + + V +P +H+LTLE L+R+E+ EDS + + LQG
Sbjct: 793 EKWLAKYNSLYTGVARQLPSNVHMLTLETSNQYALIRLEHQFEADEDSKLSMPVNVSLQG 852
Query: 221 IFNGIHIKSVKETTLAANQWLDDYDKWTWN 310
+F + + V+E LAANQ L D WN
Sbjct: 853 LFTDLEVSKVEELNLAANQLLKDKHPMQWN 882
>SB_1298| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1668
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Frame = +2
Query: 302 TWNTEGDFYE----SFNKKYGSFEAVNKAVDGPDVREDEGLKIKLKAKEIRSFIADIE 463
T+NT+G+ E SFNKK S + ++D P + + L+ K KE + ++I+
Sbjct: 245 TFNTKGEISERKEESFNKKTNSSSQTDLSIDTPPDKRELKLEYKESVKERQRLQSEID 302
>SB_708| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 121
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Frame = +2
Query: 134 EPWGDQILLRIENYKTGAEDST-IEIDLQGIFNGIHIKSVKETTLAANQWLDDYDKWTWN 310
E WGD+ ++IE + + E D Q +F + K W D D W+
Sbjct: 6 EDWGDEFSIKIEPTSPPPDSAQHAETDEQDLFKDMTPVFQKPKKADLGSWEDGDDSGGWD 65
Query: 311 TEG 319
EG
Sbjct: 66 AEG 68
>SB_46260| Best HMM Match : CUB (HMM E-Value=7.3e-24)
Length = 830
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = -1
Query: 334 AFVKVSFRIPSPLIIVVQPLVCG*RCLFYAFDM 236
AF++ S R P+ ++V ++ G RCL ++++M
Sbjct: 4 AFIEASHRRPNDRAVLVSGVMTGERCLLFSYNM 36
>SB_38688| Best HMM Match : TP901-1_ORF40 (HMM E-Value=1.7)
Length = 576
Score = 28.3 bits (60), Expect = 6.1
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = +2
Query: 182 GAEDSTIEIDLQGIFNGIHIKSVKETTLAANQWLDDYDKWTWNTEGDFYES 334
G ED EI+ + F+G KSVK+T++ + D +K NT+ D +S
Sbjct: 75 GLEDIDTEINREYDFSGA--KSVKKTSITLVDYSDGSNKIVENTKTDLPQS 123
>SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042)
Length = 4607
Score = 28.3 bits (60), Expect = 6.1
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = -1
Query: 247 AFDMDTVEYALQVNFDGRIFGTGLVVFDSQQDLVAPRLQGEQME-PVRHRGLDKLLAILQ 71
A + + ++ ALQ NF GR GTG + + L ++ GE+ PV+ D L
Sbjct: 2374 ADECNAIQVALQRNFGGRSLGTGKIQSVFLEKLKKHQVVGEETSLPVKDLIRDNLYDKTA 2433
Query: 70 PHPLLV 53
H +++
Sbjct: 2434 RHLMVI 2439
>SB_51220| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1601
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 135 SRVSRWSPSGIGVLTNFLQFSNLIHC 58
S + RWSPS + VL+N+ N HC
Sbjct: 1317 SFIFRWSPSDVLVLSNY-SLGNAAHC 1341
>SB_13056| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 193
Score = 27.9 bits (59), Expect = 8.0
Identities = 21/56 (37%), Positives = 30/56 (53%)
Frame = +2
Query: 74 ENCKKFVKTPMPDGLHLLTLEPWGDQILLRIENYKTGAEDSTIEIDLQGIFNGIHI 241
+ K+F+K PD L TLE R+E ++ ED T+E L+GI + IHI
Sbjct: 122 DQMKRFLKADSPDEYPLKTLEK-------RLE--ESCKEDETLESLLEGITSLIHI 168
>SB_2368| Best HMM Match : Patched (HMM E-Value=8.6e-08)
Length = 1420
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +2
Query: 212 LQGIFNGIHIKSVKETTLAANQWLDDYDKW 301
+Q +FN + + + A+ WLDDY W
Sbjct: 1135 IQQVFNASLSSNRSKIAMPASSWLDDYFNW 1164
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,863,837
Number of Sequences: 59808
Number of extensions: 446053
Number of successful extensions: 1541
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1538
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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