Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0136
         (682 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY028783-1|AAK32957.1|  499|Anopheles gambiae cytochrome P450 pr...    25   2.9  
AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    24   3.9  
AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcript...    23   6.7  
AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcript...    23   8.9  

>AY028783-1|AAK32957.1|  499|Anopheles gambiae cytochrome P450
           protein.
          Length = 499

 Score = 24.6 bits (51), Expect = 2.9
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = -3

Query: 215 AGQFRWSNLRHRSCSFRFSTGSGRPKAP 132
           +G  RWS LRH S    FSTG  R   P
Sbjct: 118 SGSERWSVLRHASSPI-FSTGRLRAFLP 144



 Score = 24.2 bits (50), Expect = 3.9
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 68  RLENCKKFVKTPMPDGLHLLTLEPWGDQILLRIENYKTGA 187
           R++   + +K P  DG   LTL     Q+ L +  Y+T A
Sbjct: 266 RVDLIDQLLKAPGFDGKSSLTLSEIAAQVFLFVAAYETNA 305


>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
           chain protein.
          Length = 1024

 Score = 24.2 bits (50), Expect = 3.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 112 RAPSAHPGALGRP 150
           + P+ HPGA GRP
Sbjct: 166 KGPAGHPGAPGRP 178


>AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1209

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 163 SQQDLVAPRLQGEQMEPVRHRG 98
           SQ+ L  PR Q     P+ H+G
Sbjct: 46  SQRALPVPRTQNRNGSPINHQG 67


>AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1009

 Score = 23.0 bits (47), Expect = 8.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 585 KHKCRLKQTTFHPSIYT 535
           KH+ RL Q  FH  +Y+
Sbjct: 289 KHRDRLAQRAFHTDLYS 305


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 704,102
Number of Sequences: 2352
Number of extensions: 15285
Number of successful extensions: 26
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 68577420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)