Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0136
(682 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40948-5|AAA81731.2| 955|Caenorhabditis elegans Hypothetical pr... 46 2e-05
U39849-6|AAM81124.1| 642|Caenorhabditis elegans Hypothetical pr... 33 0.25
U39849-5|AAA81048.2| 663|Caenorhabditis elegans Hypothetical pr... 33 0.25
Z81508-1|CAB04142.1| 331|Caenorhabditis elegans Hypothetical pr... 32 0.33
U23518-2|AAC70884.4| 496|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical p... 28 5.4
Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical pr... 28 5.4
AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein. 28 5.4
U64853-2|AAB04975.2| 529|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z77132-6|CAB00861.3| 1406|Caenorhabditis elegans Hypothetical pr... 27 9.4
AL117195-10|CAB60771.1| 1072|Caenorhabditis elegans Hypothetical... 27 9.4
AJ276018-1|CAC81666.1| 1122|Caenorhabditis elegans putative TRP ... 27 9.4
>U40948-5|AAA81731.2| 955|Caenorhabditis elegans Hypothetical protein
F55D10.1 protein.
Length = 955
Score = 46.4 bits (105), Expect = 2e-05
Identities = 28/64 (43%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Frame = +2
Query: 92 VKTPMPDGLHLLTLEPWGDQ-ILLRIENYKTGAEDSTI-EIDLQGIFNGIHIKSVKETTL 265
+K +P G+HLLTLE W + L+R EN G E ++I E D IF I S KE L
Sbjct: 858 LKFELPIGIHLLTLEKWHKKSSLIRFENIYHGEEGNSIKEFDPTHIFTNFDIVSFKELLL 917
Query: 266 AANQ 277
AN+
Sbjct: 918 GANR 921
>U39849-6|AAM81124.1| 642|Caenorhabditis elegans Hypothetical
protein C06A8.1b protein.
Length = 642
Score = 32.7 bits (71), Expect = 0.25
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +2
Query: 176 KTGAEDSTIEIDLQGIFNGIHI-KSVKETTLAANQWLDD-YDKWTWNTEGDFYESFNKKY 349
KT +E++T G+F G I + L+ W D+ Y W GDFY +K Y
Sbjct: 545 KTNSEETTPIAVTWGVFPGSEIAQPTVVDPLSFRAWRDEAYQMWMAQW-GDFYPKESKSY 603
Query: 350 GSFEAVN 370
G +AV+
Sbjct: 604 GVIKAVH 610
>U39849-5|AAA81048.2| 663|Caenorhabditis elegans Hypothetical
protein C06A8.1a protein.
Length = 663
Score = 32.7 bits (71), Expect = 0.25
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +2
Query: 176 KTGAEDSTIEIDLQGIFNGIHI-KSVKETTLAANQWLDD-YDKWTWNTEGDFYESFNKKY 349
KT +E++T G+F G I + L+ W D+ Y W GDFY +K Y
Sbjct: 566 KTNSEETTPIAVTWGVFPGSEIAQPTVVDPLSFRAWRDEAYQMWMAQW-GDFYPKESKSY 624
Query: 350 GSFEAVN 370
G +AV+
Sbjct: 625 GVIKAVH 631
>Z81508-1|CAB04142.1| 331|Caenorhabditis elegans Hypothetical
protein F20E11.1 protein.
Length = 331
Score = 32.3 bits (70), Expect = 0.33
Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 2/110 (1%)
Frame = -1
Query: 481 RSLVGIFDIRYKRPYLLRFKFDFEAFVLSDVRSVDSFV--HGLEAPVFLVEAFVKVSFRI 308
R LV + ++ +P+ F F L + + + HG L ++ V+ I
Sbjct: 216 RKLVNLQSVQRSKPHNYIFLQTMVVFTLKSIHILIYIMTSHGGNFSPILFTNWIIVTDFI 275
Query: 307 PSPLIIVVQPLVCG*RCLFYAFDMDTVEYALQVNFDGRIFGTGLVVFDSQ 158
+PLI+ + L C R + F ++ Y V F TG VVF Q
Sbjct: 276 TTPLIVQMSYLSCNKRNMSVLFSSHSIRYFFNVLFH---LKTGAVVFPRQ 322
>U23518-2|AAC70884.4| 496|Caenorhabditis elegans Hypothetical
protein F21D12.3 protein.
Length = 496
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -1
Query: 409 AFVLSDVRSVDSFVHGLEAPVFLVEAFVKVSFRIPSPLIIVVQPL 275
AFV+ DS ++ +++P + A + +SF L+IV+ PL
Sbjct: 288 AFVVYGDSMTDSVIYSIQSPSLQLLANLMISFHCIMTLVIVINPL 332
>Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical
protein C47D12.1c protein.
Length = 4053
Score = 28.3 bits (60), Expect = 5.4
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +2
Query: 170 NYKTGAEDSTIEIDLQGIFNGIHIKS 247
NY+TG +DS + + L+ + + +H+ S
Sbjct: 2764 NYQTGVQDSVLAVWLEAVGDAVHLPS 2789
>Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical protein
C47D12.1b protein.
Length = 4061
Score = 28.3 bits (60), Expect = 5.4
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +2
Query: 170 NYKTGAEDSTIEIDLQGIFNGIHIKS 247
NY+TG +DS + + L+ + + +H+ S
Sbjct: 2775 NYQTGVQDSVLAVWLEAVGDAVHLPS 2800
>Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical protein
C47D12.1a protein.
Length = 4064
Score = 28.3 bits (60), Expect = 5.4
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +2
Query: 170 NYKTGAEDSTIEIDLQGIFNGIHIKS 247
NY+TG +DS + + L+ + + +H+ S
Sbjct: 2775 NYQTGVQDSVLAVWLEAVGDAVHLPS 2800
>AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.
Length = 4064
Score = 28.3 bits (60), Expect = 5.4
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +2
Query: 170 NYKTGAEDSTIEIDLQGIFNGIHIKS 247
NY+TG +DS + + L+ + + +H+ S
Sbjct: 2775 NYQTGVQDSVLAVWLEAVGDAVHLPS 2800
>U64853-2|AAB04975.2| 529|Caenorhabditis elegans Hypothetical
protein K11G9.2 protein.
Length = 529
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -2
Query: 120 WSPSGIGVLTNFLQFSNLIHCS*LR 46
W+P G G + + + F HCS LR
Sbjct: 411 WNPDGFGPVGSIVPFKGAAHCSELR 435
>Z77132-6|CAB00861.3| 1406|Caenorhabditis elegans Hypothetical protein
F54D1.5 protein.
Length = 1406
Score = 27.5 bits (58), Expect = 9.4
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Frame = +3
Query: 84 RSLSRPRCLTGSICSPWSLGATRSC*ESKTTRPVPKIRPSKLTC-RAYSTVSISKA*KRQ 260
RS S R LT IC P L SKT R + + P +L R T + S +
Sbjct: 775 RSGSNVRVLTALICPPAILFMAYKPKHSKTARLLSEETPEQLPYPRESITSTTSNRYRYS 834
Query: 261 R*PQTSGWTTMISGLGIRKETFTKASTRNTGAS 359
+ P+ T + G +K T +S +N+G +
Sbjct: 835 KGPEEQKETLLEKGSYTKKVTII-SSRKNSGVA 866
>AL117195-10|CAB60771.1| 1072|Caenorhabditis elegans Hypothetical
protein Y57A10A.15 protein.
Length = 1072
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2
Query: 278 WLDDYDKWTWNTEGDFYESFNKKYGSFEAVNKAVDGPD 391
W+ +D WT+N + +E FNK + + VN ++D D
Sbjct: 412 WMWHHD-WTFNQKQSNFEWFNKLFKARSFVNLSLDEVD 448
>AJ276018-1|CAC81666.1| 1122|Caenorhabditis elegans putative TRP
homologous cationchannel protein.
Length = 1122
Score = 27.5 bits (58), Expect = 9.4
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Frame = +3
Query: 84 RSLSRPRCLTGSICSPWSLGATRSC*ESKTTRPVPKIRPSKLTC-RAYSTVSISKA*KRQ 260
RS S R LT IC P L SKT R + + P +L R T + S +
Sbjct: 491 RSGSNVRVLTALICPPAILFMAYKPKHSKTARLLSEETPEQLPYPRESITSTTSNRYRYS 550
Query: 261 R*PQTSGWTTMISGLGIRKETFTKASTRNTGAS 359
+ P+ T + G +K T +S +N+G +
Sbjct: 551 KGPEEQKETLLEKGSYTKKVTII-SSRKNSGVA 582
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,441,587
Number of Sequences: 27780
Number of extensions: 335605
Number of successful extensions: 887
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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