Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0136
         (682 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.2  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   8.2  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   8.2  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   8.2  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   8.2  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 330 KASTRNTGASRP*TKLSTDLTSE 398
           K+S  +TG+S P   LST L S+
Sbjct: 357 KSSESSTGSSIPKLNLSTALMSQ 379


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = -2

Query: 147 SPQGSRVSRWSPSGIGVLTNFLQ 79
           +PQG  +S + P G+ +L + ++
Sbjct: 361 TPQGVFLSLYQPQGMNILGDLIE 383


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 5/14 (35%), Positives = 9/14 (64%)
 Frame = -2

Query: 276 WFAASVVSFTLLIW 235
           W  +S +SF  ++W
Sbjct: 171 WICSSAISFPAIVW 184


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +2

Query: 35  DASGLSYEQWMRLENCKKFVKTPMPDGLHL 124
           DA  +S +QW        F   P  DG+ L
Sbjct: 327 DAKTISVQQWNSYWGILGFPSAPTIDGIFL 356


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +2

Query: 35  DASGLSYEQWMRLENCKKFVKTPMPDGLHL 124
           DA  +S +QW        F   P  DG+ L
Sbjct: 327 DAKTISVQQWNSYWGILGFPSAPTIDGIFL 356


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,890
Number of Sequences: 438
Number of extensions: 4150
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)