Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0135
         (723 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    27   0.15 
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    22   4.4  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    22   4.4  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    22   4.4  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    22   4.4  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    22   4.4  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   5.8  

>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 27.1 bits (57), Expect = 0.15
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +3

Query: 498 NCPTAARSAGTVGKWGITSFTSIRSAPYAYSSNVLKKPVQDQNS 629
           N P ++ S+G++G++  T        P  Y SN+L +P  + NS
Sbjct: 62  NSPPSSTSSGSLGQFPATPVIDPAKDPAIY-SNLLPRPGSNDNS 104


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 594 NVLKKPVQDQNSPLTV 641
           NVL++PV +++ PL V
Sbjct: 16  NVLERPVANESEPLEV 31


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 594 NVLKKPVQDQNSPLTV 641
           NVL++PV +++ PL V
Sbjct: 16  NVLERPVANESEPLEV 31


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 594 NVLKKPVQDQNSPLTV 641
           NVL++PV +++ PL V
Sbjct: 16  NVLERPVANESEPLEV 31


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 594 NVLKKPVQDQNSPLTV 641
           NVL++PV +++ PL V
Sbjct: 16  NVLERPVANESEPLEV 31


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 594 NVLKKPVQDQNSPLTV 641
           NVL++PV +++ PL V
Sbjct: 16  NVLERPVANESEPLEV 31


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +3

Query: 540  WGITSFTSIRSAPYAYSSN 596
            W +T     R  PYAY SN
Sbjct: 2614 WTVTRDPQGRIGPYAYLSN 2632


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,497
Number of Sequences: 336
Number of extensions: 2836
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19259425
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)