Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0135
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    30   0.38 
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    27   3.6  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.6  
SPAC12B10.09 |||S-adenosylmethionine transporter |Schizosaccharo...    26   4.7  
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa...    25   8.3  

>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
 Frame = +3

Query: 489 ENSNCPTAARSAGTVGKWGITSFT-SIRSAPYAYSSNVLKKPVQDQNSPLTVPA 647
           E ++ P+++ ++       + S++ SI S PY  +SN+++ P +D  SPL  PA
Sbjct: 280 ETTSPPSSSPNSDDAYSPQVDSYSPSINSVPY--TSNIVENPSEDNLSPLPPPA 331


>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 359

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +1

Query: 490 RTATVLPRLVLQVQLESGVLPALRQSEARLTHTLAMFLRSQFKIK 624
           + A VL R+     LE+  L  +RQ    L ++ AMFL ++  IK
Sbjct: 313 KLAKVLKRIAFLEHLENDELYDIRQKCKNLLYSWAMFLPNEPSIK 357


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 605 LKNIARVCVRRASD*RKAGNTPLSNCTCRTS 513
           + N+ R CV++  + R+  +TP  N T +TS
Sbjct: 417 VNNVDRKCVKKQMNYREESHTPHGNTTRKTS 447


>SPAC12B10.09 |||S-adenosylmethionine transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 345

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +2

Query: 167 GLIKLKTVIVGKVYRPWKNGGCVIFMGCVFV*LDLFK 277
           G + L   IV +V   W +GG  IF+GC  V L+  K
Sbjct: 307 GFLALYKGIVPRVL--WLSGGGAIFLGCYDVILNFMK 341


>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
           Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 502

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
 Frame = +1

Query: 472 IVPYLERTATVLPRLVLQVQLESGVLPALRQSEA----RLTHTLAMF-LRSQFKIKIAP* 636
           +VP+L  T  + P+ + Q + E  ++P +   E        HT  +  +R +F +  AP 
Sbjct: 329 VVPFLYLTLDLPPKPIFQDEFEGNIIPQVELKEILNKYNGVHTQELAGMRRRFHLMTAP- 387

Query: 637 QYQPLRQNNLHRSPKNSLNPEMQNYILQF 723
              P    ++ R  KN+   E    I+ F
Sbjct: 388 ---PYFIFHIKRFMKNNYFTERNQTIVTF 413


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,763,001
Number of Sequences: 5004
Number of extensions: 52128
Number of successful extensions: 111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)