Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0135
         (723 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0580 + 4624111-4624549,4625243-4625955                           29   3.7  
03_02_0191 - 6270591-6271364,6271458-6272168                           29   3.7  
01_01_0078 + 587975-588179,588506-588606,589087-589167,589240-59...    29   3.7  
07_01_0310 + 2209084-2209554                                           28   8.6  

>11_01_0580 + 4624111-4624549,4625243-4625955
          Length = 383

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +2

Query: 209 RPWKNGGCVIFMGC 250
           RPWKN   V+FMGC
Sbjct: 281 RPWKNHSRVVFMGC 294


>03_02_0191 - 6270591-6271364,6271458-6272168
          Length = 494

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 21/73 (28%), Positives = 32/73 (43%)
 Frame = -3

Query: 547 IPHFPTVPAERAAVGQLLFSLNRALSSGTATLPPLPLPQRDILIISSKTMTLAPTR*TMC 368
           IP  P++ A RA    ++FS    L   T   P       DIL+++    +  P+   M 
Sbjct: 147 IPPNPSMEASRAEAQLVIFSAIDDLVRRTGLKPK----DIDILVVNCSLFSPTPSLSAMI 202

Query: 367 LSNVKANSTFRSF 329
           ++  K  S  RSF
Sbjct: 203 INKYKLRSNIRSF 215


>01_01_0078 +
           587975-588179,588506-588606,589087-589167,589240-590178,
           590388-590542,590837-590902,590963-591023,591659-591853,
           591939-592049,592116-592280
          Length = 692

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -3

Query: 514 AAVGQLLFSLNRALSSGTATLPPLPLPQRDILIISSKTMTLAP 386
           A+ GQLL +    LSS  +   PL +  +D   + SKT  + P
Sbjct: 373 ASSGQLLQNAPSMLSSSQSMQTPLQMSSKDFKAVESKTRVVEP 415


>07_01_0310 + 2209084-2209554
          Length = 156

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 556 KLVIPHFPTVPAERAAVGQLLFSLNRALSSGTATLPPLP 440
           K+ +P  P VPA        L  +    +  TATLPP+P
Sbjct: 66  KVALPPMPAVPAVPTVPAVALPPMPAVPAVPTATLPPMP 104


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,498,296
Number of Sequences: 37544
Number of extensions: 318407
Number of successful extensions: 751
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)