Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0135
         (723 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3993| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.8  
SB_20112| Best HMM Match : EGF (HMM E-Value=0)                         28   6.7  
SB_33458| Best HMM Match : HEAT (HMM E-Value=7.9e-15)                  28   8.8  
SB_10111| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_9456| Best HMM Match : OTU (HMM E-Value=3.1e-18)                    28   8.8  

>SB_3993| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 543

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -1

Query: 204 TFPTI-TVFNLINPLSPCQIIIASKSTNYFL*TY*GR*IELNSTSIMTNRTQTALLS 37
           TFP I + F+L +  +P  I  AS +TN     Y G  I+L  TS+M +    ++ S
Sbjct: 181 TFPKIVSAFSLASEYAPLSIKDASVNTNKENDAYPGGFIDLTETSVMWSTCDVSVRS 237


>SB_20112| Best HMM Match : EGF (HMM E-Value=0)
          Length = 2112

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 456  VAVPLDSALFRENSNCPTAARSAGT 530
            + VP++S +FRE  + P +A S GT
Sbjct: 2050 MCVPVESGMFREKHHTPPSAHSYGT 2074


>SB_33458| Best HMM Match : HEAT (HMM E-Value=7.9e-15)
          Length = 875

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 17/37 (45%), Positives = 26/37 (70%)
 Frame = +1

Query: 394 VSSFLMKLLECLAGVEVEAAAWLCRLIVPYLERTATV 504
           V + ++K  E LAG  VE A + C+LI+P+L+ TA+V
Sbjct: 49  VVTMVIKSAE-LAGSFVEPAVF-CKLILPHLKSTASV 83


>SB_10111| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 123

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = -3

Query: 556 KLVIPHFPTVPAERAAVGQLLFSLNRALSS 467
           ++VIP+F T  A RAA G    +LN AL++
Sbjct: 35  RIVIPYFYTYGAPRAAYGHAGSALNLALTN 64


>SB_9456| Best HMM Match : OTU (HMM E-Value=3.1e-18)
          Length = 1311

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +3

Query: 534  GKWGITSFTSIRSAPYAYSSNVLKKPV-QDQNSPLTVPAVEAE 659
            GK  +TS  +++  PY    + L  PV ++++S L  P ++ E
Sbjct: 1235 GKTEVTSDLTMKEVPYKDEDSTLATPVIKEEDSTLATPVIKDE 1277


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,362,065
Number of Sequences: 59808
Number of extensions: 371516
Number of successful extensions: 734
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)