Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0135
         (723 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98269-5|CAB10973.1| 1741|Drosophila melanogaster EG:87B1.2,FBgn...    50   4e-06
AE014298-344|AAF45734.1| 1741|Drosophila melanogaster CG3707-PA,...    50   4e-06
U40214-1|AAA91230.1| 1768|Drosophila melanogaster parallel siste...    48   2e-05
AY119606-1|AAM50260.1| 1108|Drosophila melanogaster LD29979p pro...    44   2e-04
M32661-1|AAA28897.1|  498|Drosophila melanogaster protein ( D.me...    29   8.5  
AY071475-1|AAL49097.1|  604|Drosophila melanogaster RE54962p pro...    29   8.5  
AE014134-667|AAF51069.1|  498|Drosophila melanogaster CG2822-PA,...    29   8.5  
AE014134-666|AAF51068.3|  604|Drosophila melanogaster CG2822-PB,...    29   8.5  

>Z98269-5|CAB10973.1| 1741|Drosophila melanogaster
           EG:87B1.2,FBgn0004655;wapl protein.
          Length = 1741

 Score = 49.6 bits (113), Expect = 4e-06
 Identities = 24/40 (60%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
 Frame = +3

Query: 456 VAVPLDSALF-RENSNCPTAARSAGTVGKWGITSFTSIRS 572
           + VPLDS    +EN+N PT ARS GTVGKWG   FTS R+
Sbjct: 8   IVVPLDSLCKEKENTNRPTVARSVGTVGKWGKMGFTSTRT 47


>AE014298-344|AAF45734.1| 1741|Drosophila melanogaster CG3707-PA,
           isoform A protein.
          Length = 1741

 Score = 49.6 bits (113), Expect = 4e-06
 Identities = 24/40 (60%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
 Frame = +3

Query: 456 VAVPLDSALF-RENSNCPTAARSAGTVGKWGITSFTSIRS 572
           + VPLDS    +EN+N PT ARS GTVGKWG   FTS R+
Sbjct: 8   IVVPLDSLCKEKENTNRPTVARSVGTVGKWGKMGFTSTRT 47


>U40214-1|AAA91230.1| 1768|Drosophila melanogaster parallel sister
           chromatids protein protein.
          Length = 1768

 Score = 47.6 bits (108), Expect = 2e-05
 Identities = 23/37 (62%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
 Frame = +3

Query: 456 VAVPLDSALF-RENSNCPTAARSAGTVGKWGITSFTS 563
           + VPLDS    +EN+N PT ARS GTVGKWG   FTS
Sbjct: 8   IVVPLDSLCKEKENTNRPTVARSVGTVGKWGKMGFTS 44


>AY119606-1|AAM50260.1| 1108|Drosophila melanogaster LD29979p
           protein.
          Length = 1108

 Score = 44.4 bits (100), Expect = 2e-04
 Identities = 23/40 (57%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
 Frame = +3

Query: 456 VAVPLDSALF-RENSNCPTAARSAGTVGKWGITSFTSIRS 572
           + VPLDS    +EN+N PT ARS GTVGK G   FTS R+
Sbjct: 8   IVVPLDSLCKEKENTNRPTVARSVGTVGKLGKMGFTSTRT 47


>M32661-1|AAA28897.1|  498|Drosophila melanogaster protein (
           D.melanogaster Shaw2protein mRNA, complete cds. ).
          Length = 498

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 395 TCTNSLNYVLVKCQSK*HISFVYSQCICYEILRFD 291
           T   S  + L K Q+  HI+F Y +C+C     F+
Sbjct: 211 TANGSNGWFLDKTQTNAHIAFFYIECVCNAWFTFE 245


>AY071475-1|AAL49097.1|  604|Drosophila melanogaster RE54962p
           protein.
          Length = 604

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 395 TCTNSLNYVLVKCQSK*HISFVYSQCICYEILRFD 291
           T   S  + L K Q+  HI+F Y +C+C     F+
Sbjct: 211 TANGSNGWFLDKTQTNAHIAFFYIECVCNAWFTFE 245


>AE014134-667|AAF51069.1|  498|Drosophila melanogaster CG2822-PA,
           isoform A protein.
          Length = 498

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 395 TCTNSLNYVLVKCQSK*HISFVYSQCICYEILRFD 291
           T   S  + L K Q+  HI+F Y +C+C     F+
Sbjct: 211 TANGSNGWFLDKTQTNAHIAFFYIECVCNAWFTFE 245


>AE014134-666|AAF51068.3|  604|Drosophila melanogaster CG2822-PB,
           isoform B protein.
          Length = 604

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 395 TCTNSLNYVLVKCQSK*HISFVYSQCICYEILRFD 291
           T   S  + L K Q+  HI+F Y +C+C     F+
Sbjct: 211 TANGSNGWFLDKTQTNAHIAFFYIECVCNAWFTFE 245


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,548,768
Number of Sequences: 53049
Number of extensions: 553434
Number of successful extensions: 1587
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1587
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3231892257
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)