Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0135
         (723 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64844-11|AAB18311.1|  482|Caenorhabditis elegans Hypothetical p...    30   1.9  
Z32681-5|CAA83606.1|  341|Caenorhabditis elegans Hypothetical pr...    29   2.5  
U23510-13|AAK71392.2|  425|Caenorhabditis elegans Hypothetical p...    29   3.4  
AC006629-10|ABC48257.1|  312|Caenorhabditis elegans Hypothetical...    28   5.9  
Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical pr...    28   7.8  
AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like prot...    28   7.8  

>U64844-11|AAB18311.1|  482|Caenorhabditis elegans Hypothetical
           protein T22F3.8 protein.
          Length = 482

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
 Frame = +2

Query: 158 GLSGLIKLKTVIVGKVYRPWKNGGCVIFMGCVFV*L-DLFKIKLLHQILKFHSKYIASKR 334
           G SGL      ++   YR W    C++ M C+ V     +K+ +LH     H    A + 
Sbjct: 358 GGSGLFFASIGLIPMEYRGWSVFSCIMTMSCIGVNPGGFYKVAVLHSRQFAHVVLTAIQW 417

Query: 335 TKCAICF 355
            KC   F
Sbjct: 418 IKCLALF 424


>Z32681-5|CAA83606.1|  341|Caenorhabditis elegans Hypothetical
           protein F56F3.4 protein.
          Length = 341

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 293 QILKFHSKYIASKRTKCAICFDI*QAHSSASWCKCHR 403
           ++L+   K+ A ++TKC  CF    A      CKC R
Sbjct: 260 ELLENLKKFEAERKTKCNTCFKKLSAAQQTMHCKCLR 296


>U23510-13|AAK71392.2|  425|Caenorhabditis elegans Hypothetical
           protein R12C12.8a protein.
          Length = 425

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 419 NNFIKNDDTCTNSLNYVLVKCQSK*HISFVYSQCICYE 306
           N F+KN  +C NS+N+    CQ+   +  V   C C+E
Sbjct: 101 NLFVKN--SCNNSVNFCYRSCQN--DLPIVVQGCSCFE 134


>AC006629-10|ABC48257.1|  312|Caenorhabditis elegans Hypothetical
           protein F12E12.8 protein.
          Length = 312

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 546 ITSFTSIRSAPYAYSSNVLKKPVQDQNSPLTVPAV 650
           + SFT      Y++ S V KK V+  N PLT+ A+
Sbjct: 20  LQSFTYFDMIKYSFISKVTKKVVRSFNLPLTLLAI 54


>Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical protein
            T06E4.3b protein.
          Length = 2514

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +1

Query: 412  KLLECLA--GVEVEAAAWLCRLIVPYLERTATVLPRL 516
            +LL+C A  GV  EAA WL   +  Y ER+  VLP L
Sbjct: 1893 QLLQCFAHSGVMYEAA-WLLDYLSNYKERSKHVLPLL 1928


>Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical protein
            T06E4.3a protein.
          Length = 2531

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +1

Query: 412  KLLECLA--GVEVEAAAWLCRLIVPYLERTATVLPRL 516
            +LL+C A  GV  EAA WL   +  Y ER+  VLP L
Sbjct: 1910 QLLQCFAHSGVMYEAA-WLLDYLSNYKERSKHVLPLL 1945


>AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like protein
            protein.
          Length = 2514

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +1

Query: 412  KLLECLA--GVEVEAAAWLCRLIVPYLERTATVLPRL 516
            +LL+C A  GV  EAA WL   +  Y ER+  VLP L
Sbjct: 1893 QLLQCFAHSGVMYEAA-WLLDYLSNYKERSKHVLPLL 1928


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,234,054
Number of Sequences: 27780
Number of extensions: 287553
Number of successful extensions: 691
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)