Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0135
         (723 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   3.9  
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               22   5.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.1  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         21   8.9  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 168 PLSPCQIIIASKSTNYFL*T 109
           PL P  +I   KST +FL T
Sbjct: 442 PLDPVVVISNDKSTEFFLAT 461


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 416 NFIKNDDTCTNSLNYVLVKCQSK 348
           N  K+ D C N LN+++  C SK
Sbjct: 120 NANKSTDKCENGLNFII--CFSK 140


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/37 (24%), Positives = 18/37 (48%)
 Frame = +3

Query: 309 IANTLRVNERNVLFALTFDKHIVQRVGASVIVFDEII 419
           +   L +N +  L    FDKHI+ ++   +  + E +
Sbjct: 872 LEGNLMINNKYALKFFPFDKHILDKLPTLISNYIEAV 908


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -2

Query: 611 WLLKNIARVCVRRASD*RKAGNTPLSNCTCR 519
           WL  N +   +R  +  RK G+     C CR
Sbjct: 73  WLSINHSACAIRCLAQRRKGGSCRNGVCICR 103


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,498
Number of Sequences: 438
Number of extensions: 3521
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)