Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0135
         (723 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g08620.1 68414.m00955 transcription factor jumonji (jmj) fami...    32   0.33 
At1g68530.2 68414.m07829 very-long-chain fatty acid condensing e...    29   4.1  
At1g68530.1 68414.m07828 very-long-chain fatty acid condensing e...    29   4.1  
At4g13480.1 68417.m02104 myb family transcription factor (MYB79)...    28   7.2  
At3g18230.1 68416.m02319 octicosapeptide/Phox/Bem1p (PB1) domain...    28   7.2  
At2g20590.2 68415.m02408 reticulon family protein non-consensus ...    27   9.5  
At2g20590.1 68415.m02407 reticulon family protein non-consensus ...    27   9.5  

>At1g08620.1 68414.m00955 transcription factor jumonji (jmj) family
           protein / zinc finger (C5HC2 type) family protein
           contains Pfam domains, PF02375: jmjN domain, PF02373:
           jmjC domain and PF02928: C5HC2 zinc finger
          Length = 1183

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 299 LKFHSKYIASKRTKCAICFDI*QAHSSASWCKC 397
           LK HS + A+   +C ICF     H SA+ C+C
Sbjct: 577 LKMHSNFDATNERECCICFF--DLHLSAAGCRC 607


>At1g68530.2 68414.m07829 very-long-chain fatty acid condensing
           enzyme (CUT1) identical to very-long-chain fatty acid
           condensing enzyme (CUT1) GB:AF129511 (required for
           cuticular wax biosynthesis and pollen fertility:
           Millar,A.A., et al., Plant Cell (1999))
          Length = 377

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 20/73 (27%), Positives = 31/73 (42%)
 Frame = -3

Query: 547 IPHFPTVPAERAAVGQLLFSLNRALSSGTATLPPLPLPQRDILIISSKTMTLAPTR*TMC 368
           IP  PT+ A R+    ++F     L   T   P       DILI++    +  P+   M 
Sbjct: 150 IPPTPTMDAARSEAQMVIFEAMDDLFKKTGLKPK----DVDILIVNCSLFSPTPSLSAMV 205

Query: 367 LSNVKANSTFRSF 329
           ++  K  S  +SF
Sbjct: 206 INKYKLRSNIKSF 218


>At1g68530.1 68414.m07828 very-long-chain fatty acid condensing
           enzyme (CUT1) identical to very-long-chain fatty acid
           condensing enzyme (CUT1) GB:AF129511 (required for
           cuticular wax biosynthesis and pollen fertility:
           Millar,A.A., et al., Plant Cell (1999))
          Length = 497

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 20/73 (27%), Positives = 31/73 (42%)
 Frame = -3

Query: 547 IPHFPTVPAERAAVGQLLFSLNRALSSGTATLPPLPLPQRDILIISSKTMTLAPTR*TMC 368
           IP  PT+ A R+    ++F     L   T   P       DILI++    +  P+   M 
Sbjct: 150 IPPTPTMDAARSEAQMVIFEAMDDLFKKTGLKPK----DVDILIVNCSLFSPTPSLSAMV 205

Query: 367 LSNVKANSTFRSF 329
           ++  K  S  +SF
Sbjct: 206 INKYKLRSNIKSF 218


>At4g13480.1 68417.m02104 myb family transcription factor (MYB79)
           contains PFASM profile: myb DNA binding domain PF00249;
           identical to cDNA putative transcription factor (MYB79)
           mRNA, partial cds GI:3941511
          Length = 261

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +3

Query: 570 SAPYAYSSNVLKKPVQDQNSPLTVP 644
           S P+ Y+SN L++ +Q + SP+ +P
Sbjct: 185 SKPFGYNSNSLEEQLQGRFSPVNIP 209


>At3g18230.1 68416.m02319 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein   contains Pfam profile
           PF00564: PB1 domain
          Length = 666

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 528 TVGKWGITSFTSIRSAPYAYSSNVLKKPVQDQNSPLTVP 644
           TVG +G+TS  S+ S     S+    KP+  Q+ P  +P
Sbjct: 390 TVGGYGLTSPDSVASDTSISSATSFSKPMYYQDQPPALP 428


>At2g20590.2 68415.m02408 reticulon family protein non-consensus AA
           donor splice site at 46485 and non-consensus GG acceptor
           splice site at 46563, confirmed by Ceres cDNA 1885;
           contains Pfam profile PF02453: Reticulon
          Length = 323

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 490 SLNRALSSGTATLPPLPLPQRDILIISSKTMTLAPTR 380
           SL+  LSS     P  P+P RDIL++    +  + TR
Sbjct: 28  SLDLVLSSPNTPNPSSPVPLRDILLLPPSPLRKSRTR 64


>At2g20590.1 68415.m02407 reticulon family protein non-consensus AA
           donor splice site at 46485 and non-consensus GG acceptor
           splice site at 46563, confirmed by Ceres cDNA 1885;
           contains Pfam profile PF02453: Reticulon
          Length = 431

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 490 SLNRALSSGTATLPPLPLPQRDILIISSKTMTLAPTR 380
           SL+  LSS     P  P+P RDIL++    +  + TR
Sbjct: 28  SLDLVLSSPNTPNPSSPVPLRDILLLPPSPLRKSRTR 64


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,227,612
Number of Sequences: 28952
Number of extensions: 263974
Number of successful extensions: 560
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)