Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0134
         (749 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    26   0.28 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    25   0.65 
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    25   0.85 
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        23   2.6  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   2.6  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    22   6.0  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    22   6.0  
AF146649-1|AAD38009.1|   96|Tribolium castaneum ultrathorax prot...    22   6.0  
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    21   8.0  
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      21   8.0  

>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 515 VFDRCQQMEAQRLKFFKDVLFSFHKCLNISQE 610
           + D C+++  + L F K V+ S    LNIS+E
Sbjct: 359 IMDNCEELIPEYLNFIKGVVDSEDLPLNISRE 390


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 25.0 bits (52), Expect = 0.65
 Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
 Frame = +2

Query: 218 ERKEMDEAFKKAQKPWSKLLQKVE---RARLEYHTACKQERTAQNQERN 355
           +++E      KAQ+   +++ K E     RLE HT+ K +R A++++ +
Sbjct: 846 DKREKSPTSDKAQEADGEVVVKKEVDEEERLENHTSVKIKREAEDRDED 894


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 306 TTRLANK-KEQRRIRKETPAETALLVQIKSRKWQIV 410
           TT + N  +EQ R R  TP E   +VQI  +K+  +
Sbjct: 173 TTHVMNLLREQSRTRPITPKEIERMVQIIHKKFSSI 208


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -2

Query: 178 PVLYLCHNVVHQPIPDAEV 122
           P L L HN+ H P P   +
Sbjct: 334 PNLPLTHNIAHNPYPSHSI 352


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +2

Query: 26  KWNDLIEKGPEYGTME 73
           +W D++EK  + GT+E
Sbjct: 446 RWKDILEKPRQRGTLE 461


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 14  GWAKKWNDLIEKGPEYGTMEAAWKGS 91
           GW KKW+       E+G +  A+KG+
Sbjct: 322 GWTKKWD-------EHGKVPYAYKGN 340


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 164 QIKNWQKETYHKSMIQLKERKEMDEAFKKAQ 256
           QIK W +    K   +++  KE++E  K+AQ
Sbjct: 266 QIKIWFQNRRMKLKKEIQAIKELNEQEKQAQ 296


>AF146649-1|AAD38009.1|   96|Tribolium castaneum ultrathorax
           protein.
          Length = 96

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 164 QIKNWQKETYHKSMIQLKERKEMDEAFKKAQ 256
           QIK W +    K   +++  KE++E  K+AQ
Sbjct: 48  QIKIWFQNRRMKLKKEIQAIKELNEQEKQAQ 78


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -1

Query: 371 SCLRWRFFPD 342
           SC R+RF PD
Sbjct: 208 SCARYRFMPD 217


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +2

Query: 104 ERLSDLHLSVRDRLVNDVMAQIKNWQKETYH 196
           E+L+ L +SV ++     +   + W +E YH
Sbjct: 16  EKLNTLAISVMNQWPGVRLLVTEGWDEEGYH 46


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,351
Number of Sequences: 336
Number of extensions: 3878
Number of successful extensions: 22
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)