Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0134
         (749 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               29   0.062
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    22   5.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   5.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   7.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   7.1  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   7.1  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   9.3  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   9.3  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   9.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.3  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 28.7 bits (61), Expect = 0.062
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +1

Query: 415 EMSRRSVKEPRKIPDSSSRDHGVQPSIHRGHDFSIR*VPTDGSAA 549
           E    ++K  ++ P+SSS D     SIH+   FS+    TDG  A
Sbjct: 92  ESDNENIKSQKEFPNSSSSDDERPNSIHQRASFSLN---TDGDIA 133


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 12/48 (25%), Positives = 22/48 (45%)
 Frame = +2

Query: 227 EMDEAFKKAQKPWSKLLQKVERARLEYHTACKQERTAQNQERNASGDS 370
           E+ +  KKA++   +++QK     LE        +T +NQ      D+
Sbjct: 162 EIQKXIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDA 209


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 288  NAPG*STTRLANKKEQRRIRKETPAETALLVQIK 389
            N  G S  + AN K+Q   +   P +T L  QIK
Sbjct: 993  NQAGKSILQTANIKQQSPQQHVLPGKTLLASQIK 1026


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -3

Query: 159  ITSFTSLSLTLRWRSESRSASTM 91
            +TS TS S+ L W+S     +++
Sbjct: 1412 VTSSTSSSILLHWKSGHNGGASL 1434


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -3

Query: 159  ITSFTSLSLTLRWRSESRSASTM 91
            +TS TS S+ L W+S     +++
Sbjct: 1408 VTSSTSSSILLHWKSGHNGGASL 1430


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 617 LPQIYEEFHHTINNADSQKDLK 682
           + QI E  HH  +N    +DLK
Sbjct: 15  IQQILESVHHCHHNGVVHRDLK 36


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +2

Query: 539 EAQRLKFFKDVLFSFHKCLNISQEPSLPQ 625
           E ++  ++KD++    K L +   P LP+
Sbjct: 335 EEEKADWWKDIMLLNEKTLAVPAPPVLPE 363


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +2

Query: 539 EAQRLKFFKDVLFSFHKCLNISQEPSLPQ 625
           E ++  ++KD++    K L +   P LP+
Sbjct: 335 EEEKADWWKDIMLLNEKTLAVPAPPVLPE 363


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +2

Query: 539 EAQRLKFFKDVLFSFHKCLNISQEPSLPQ 625
           E ++  ++KD++    K L +   P LP+
Sbjct: 335 EEEKADWWKDIMLLNEKTLAVPAPPVLPE 363


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 6/31 (19%), Positives = 17/31 (54%)
 Frame = +2

Query: 302 EYHTACKQERTAQNQERNASGDSSFSPDQVK 394
           ++H   +Q++  Q +++    +    PD++K
Sbjct: 158 DHHRPYQQQQQQQQRQQQRQEERRLRPDEIK 188


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,865
Number of Sequences: 438
Number of extensions: 4945
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)