Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0134
(749 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g25070.1 68418.m02971 expressed protein 39 0.003
At2g27170.1 68415.m06029 structural maintenance of chromosomes (... 36 0.022
At4g17730.1 68417.m02647 syntaxin 23 (SYP23) / PEP12-like protei... 33 0.15
At5g46860.1 68418.m05774 syntaxin 22 (SYP22) (VAM3) identical to... 33 0.20
At4g27370.1 68417.m03929 myosin family protein contains Pfam pro... 31 1.1
At2g18540.1 68415.m02160 cupin family protein contains Pfam prof... 31 1.1
At3g28770.1 68416.m03591 expressed protein 30 1.4
At5g46070.1 68418.m05665 guanylate-binding family protein contai... 30 1.9
At5g25590.1 68418.m03045 expressed protein contains Pfam profile... 30 1.9
At5g15160.1 68418.m01776 bHLH family protein 30 1.9
At3g14180.1 68416.m01792 expressed protein similar to 6b-interac... 30 1.9
At2g40770.1 68415.m05030 SNF2 domain-containing protein / helica... 30 1.9
At3g49690.1 68416.m05433 myb family transcription factor contain... 29 2.5
At1g52410.2 68414.m05915 caldesmon-related weak similarity to Ca... 29 2.5
At1g52410.1 68414.m05914 caldesmon-related weak similarity to Ca... 29 2.5
At4g26940.2 68417.m03877 galactosyltransferase family protein co... 29 3.3
At4g26940.1 68417.m03876 galactosyltransferase family protein co... 29 3.3
At2g42380.2 68415.m05245 bZIP transcription factor family protein 29 3.3
At2g26570.1 68415.m03187 expressed protein contains Pfam profile... 29 3.3
At2g01100.3 68415.m00018 expressed protein 29 3.3
At2g01100.2 68415.m00017 expressed protein 29 3.3
At2g01100.1 68415.m00016 expressed protein 29 3.3
At1g80790.1 68414.m09479 XH/XS domain-containing protein / XS zi... 29 3.3
At1g68790.1 68414.m07863 expressed protein 29 3.3
At5g55820.1 68418.m06956 expressed protein 29 4.4
At5g07660.1 68418.m00877 structural maintenance of chromosomes (... 29 4.4
At4g16590.1 68417.m02510 glucosyltransferase-related low similar... 29 4.4
At3g54670.1 68416.m06049 structural maintenance of chromosomes (... 29 4.4
At2g42380.1 68415.m05244 bZIP transcription factor family protein 29 4.4
At5g45840.1 68418.m05639 leucine-rich repeat transmembrane prote... 28 5.8
At4g11420.1 68417.m01840 eukaryotic translation initiation facto... 28 5.8
At3g01300.1 68416.m00039 protein kinase, putative similar to pro... 28 5.8
At2g38770.1 68415.m04760 expressed protein 28 5.8
At5g37160.1 68418.m04461 tRNA-splicing endonuclease positive eff... 28 7.6
At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6 ... 28 7.6
At3g15960.1 68416.m02018 DNA mismatch repair MutS family protein... 28 7.6
At3g05090.2 68416.m00553 transducin family protein / WD-40 repea... 28 7.6
At3g05090.1 68416.m00552 transducin family protein / WD-40 repea... 28 7.6
At2g45460.1 68415.m05654 forkhead-associated domain-containing p... 28 7.6
At2g22610.1 68415.m02680 kinesin motor protein-related 28 7.6
At1g08840.1 68414.m00984 DNA replication helicase, putative simi... 28 7.6
>At5g25070.1 68418.m02971 expressed protein
Length = 736
Score = 39.1 bits (87), Expect = 0.003
Identities = 36/147 (24%), Positives = 73/147 (49%), Gaps = 9/147 (6%)
Frame = +2
Query: 137 DRLVNDVMAQIKNWQKETYHKSMIQLKERKEMDEAFKKAQKPWSKLLQKVERARLEYHTA 316
D+++NDV A + KET S +++K++DE ++ +KL + AR+ A
Sbjct: 436 DKMLNDVQAGLTEVDKETEDLS----RKKKDVDEFMTSEKERGAKLR---DLARVSADEA 488
Query: 317 CKQERTAQNQERNASGDSSFSPDQVK------KMADRVSKCRDEVSKNRE--KYQTALAE 472
C+ E + ++ S S ++ K K+++ V K ++EVS RE K +++
Sbjct: 489 CEYEEVIKLRKGLMSYVSKTREERAKLVNIEEKLSEEVQKLQEEVSSTRELLKERSSKKS 548
Query: 473 ITAYN-PRYIEDMTSVFDRCQQMEAQR 550
I N +++ + + R ++EA++
Sbjct: 549 IIQQNITSFMDKIMFIEKRMPELEAEK 575
>At2g27170.1 68415.m06029 structural maintenance of chromosomes
(SMC) family protein similar to basement
membrane-associated chondroitin proteoglycan Bamacan
[Rattus norvegicus] GI:1785540; contains Pfam profile
PF02463: RecF/RecN/SMC N terminal domain. No suitalble
start codon was identified.
Length = 1207
Score = 36.3 bits (80), Expect = 0.022
Identities = 34/156 (21%), Positives = 69/156 (44%)
Frame = +2
Query: 5 RLRGWAKKWNDLIEKGPEYGTMEAAWKGSMVEAERLSDLHLSVRDRLVNDVMAQIKNWQK 184
R+ G + ND +E + T+E + S+ E E + L+ S D+ N +I +K
Sbjct: 315 RITGNIQSKNDALE---QLNTVEREMQDSLRELEAIKPLYESQVDK-ENQTSKRINELEK 370
Query: 185 ETYHKSMIQLKERKEMDEAFKKAQKPWSKLLQKVERARLEYHTACKQERTAQNQERNASG 364
S++ K+ + + K A+ W L +++E + + QE+ Q++ +
Sbjct: 371 TL---SILYQKQGRATQFSNKAARDKW--LRKEIEDLKRVLDSNTVQEQKLQDEILRLNT 425
Query: 365 DSSFSPDQVKKMADRVSKCRDEVSKNREKYQTALAE 472
D + + +KK + + +SK+ E + T E
Sbjct: 426 DLTERDEHIKKHEVEIGELESRISKSHELFNTKKRE 461
Score = 29.5 bits (63), Expect = 2.5
Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 1/119 (0%)
Frame = +2
Query: 212 LKER-KEMDEAFKKAQKPWSKLLQKVERARLEYHTACKQERTAQNQERNASGDSSFSPDQ 388
L ER +E+DE ++ +K + L K +R LEY K+ A+ + + + ++
Sbjct: 196 LDERLRELDEEKEELRK--YQQLDK-QRKSLEYTIYDKELHDAREKLEQVEVARTKASEE 252
Query: 389 VKKMADRVSKCRDEVSKNREKYQTALAEITAYNPRYIEDMTSVFDRCQQMEAQRLKFFK 565
KM DRV K +D+ SK+ ++ +L E+T +++ +++ + +EAQ+ K K
Sbjct: 253 STKMYDRVEKAQDD-SKSLDE---SLKELT-------KELQTLYKEKETVEAQQTKALK 300
>At4g17730.1 68417.m02647 syntaxin 23 (SYP23) / PEP12-like protein
identical to SP|O04378 Syntaxin 23 (AtSYP23) (AtPLP)
(AtPEP12-like protein) {Arabidopsis thaliana}
Length = 255
Score = 33.5 bits (73), Expect = 0.15
Identities = 35/161 (21%), Positives = 72/161 (44%)
Frame = +2
Query: 104 ERLSDLHLSVRDRLVNDVMAQIKNWQKETYHKSMIQLKERKEMDEAFKKAQKPWSKLLQK 283
E+L L + +LV D A++K ET H+ + ++K++ +A K K + +L++
Sbjct: 65 EKLHKTRLYI-GQLVKDTSAKLKE-ASETDHQRGVN--QKKKIVDA--KLAKDFQAVLKE 118
Query: 284 VERARLEYHTACKQERTAQNQERNASGDSSFSPDQVKKMADRVSKCRDEVSKNREKYQTA 463
++A+ A ++E S SS++ ++ D+ + R + +++ +
Sbjct: 119 FQKAQ---RLAAERETVYAPLVHKPSLPSSYTSSEIDVNGDKHPEQRALLVESKRQELVL 175
Query: 464 LAEITAYNPRYIEDMTSVFDRCQQMEAQRLKFFKDVLFSFH 586
L A+N IE+ QQ + + FKD+ H
Sbjct: 176 LDNEIAFNEAVIEEREQGIQEIQQQIGEVHEIFKDLAVLVH 216
>At5g46860.1 68418.m05774 syntaxin 22 (SYP22) (VAM3) identical to
GP|8809669| syntaxin related protein AtVam3p
[Arabidopsis thaliana]
Length = 268
Score = 33.1 bits (72), Expect = 0.20
Identities = 36/156 (23%), Positives = 74/156 (47%)
Frame = +2
Query: 104 ERLSDLHLSVRDRLVNDVMAQIKNWQKETYHKSMIQLKERKEMDEAFKKAQKPWSKLLQK 283
E+L L + +LV D A++K ET H+S + K++ +A K + + +L++
Sbjct: 60 EKLHKTRLHI-GQLVKDTSAKLKE-ASETDHQSGVN--PSKKIADA--KLARDFQAVLKE 113
Query: 284 VERARLEYHTACKQERTAQNQERNASGDSSFSPDQVKKMADRVSKCRDEVSKNREKYQTA 463
++A+ TA ++E T ++ SS++ +V D+V + R ++ +++ +
Sbjct: 114 FQKAQ---QTAAERETTYTPFVPQSALPSSYTAGEV----DKVPEQRAQLQESKRQELVL 166
Query: 464 LAEITAYNPRYIEDMTSVFDRCQQMEAQRLKFFKDV 571
L A+N IE+ Q + + FKD+
Sbjct: 167 LDNEIAFNEAVIEEREQGIQEIHQQIGEVNEIFKDL 202
>At4g27370.1 68417.m03929 myosin family protein contains Pfam
profiles: PF00063 myosin head (motor domain), PF00612 IQ
calmodulin-binding motif
Length = 1126
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/66 (27%), Positives = 34/66 (51%)
Frame = +1
Query: 157 YGTDKELAEGNLS*VNDSTKRTQGNG*SIQEGPETMVEITSEG*TRQARVPHGLQTRKNS 336
+GT + +G+LS VN+ + I E P+++VE+ S+ + + + L+ K+
Sbjct: 1030 FGTPTKELKGSLSDVNNLSTEFDQRSVIIHEDPKSLVEVKSDSISNRKQHAEELRRLKSR 1089
Query: 337 AESGKK 354
E KK
Sbjct: 1090 FEKWKK 1095
>At2g18540.1 68415.m02160 cupin family protein contains Pfam profile
PF00190: Cupin
Length = 707
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/79 (24%), Positives = 39/79 (49%)
Frame = +2
Query: 215 KERKEMDEAFKKAQKPWSKLLQKVERARLEYHTACKQERTAQNQERNASGDSSFSPDQVK 394
+ERK +E K+ ++ K ++ E+AR K+E A+ +E ++ K
Sbjct: 490 EERKREEEEAKRREEERKKREEEAEQARKREEEREKEEEMAKKREEERQRKEREEVER-K 548
Query: 395 KMADRVSKCRDEVSKNREK 451
+ ++ K R+E ++ RE+
Sbjct: 549 RREEQERKRREEEARKREE 567
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 30.3 bits (65), Expect = 1.4
Identities = 23/107 (21%), Positives = 50/107 (46%), Gaps = 2/107 (1%)
Frame = +2
Query: 146 VNDVMAQIKNWQKETYHKSMIQLKERKEMDEAFKKAQKPWSKLLQKVERARLEYHT--AC 319
VN+ + + ++ +KET +LKE + ++ K+++ SK +K E + T
Sbjct: 967 VNNELKKQEDNKKETTKSENSKLKEENKDNKEKKESEDSASKNREKKEYEEKKSKTKEEA 1026
Query: 320 KQERTAQNQERNASGDSSFSPDQVKKMADRVSKCRDEVSKNREKYQT 460
K+E+ ++ DS + +K R K + + + +EK ++
Sbjct: 1027 KKEKKKSQDKKREEKDSEERKSKKEKEESRDLKAKKKEEETKEKKES 1073
>At5g46070.1 68418.m05665 guanylate-binding family protein contains
Pfam domains PF02263: Guanylate-binding protein,
N-terminal domain and PF02841: Guanylate-binding protein,
C-terminal domain
Length = 1060
Score = 29.9 bits (64), Expect = 1.9
Identities = 21/108 (19%), Positives = 46/108 (42%)
Frame = +2
Query: 227 EMDEAFKKAQKPWSKLLQKVERARLEYHTACKQERTAQNQERNASGDSSFSPDQVKKMAD 406
E+ E K A+ + + ++AR + T+ K++ +Q + QV+ +
Sbjct: 764 EVKERCKAAEIEAKRATELADKARTDAVTSQKEKSESQRLAMERLAQIERAERQVENLER 823
Query: 407 RVSKCRDEVSKNREKYQTALAEITAYNPRYIEDMTSVFDRCQQMEAQR 550
+ + DE+ + R A++++T R E + ++ AQR
Sbjct: 824 QKTDLEDELDRLRVSEMEAVSKVTILEARVEEREKEIGSLIKETNAQR 871
>At5g25590.1 68418.m03045 expressed protein contains Pfam profile
PF04783: Protein of unknown function (DUF630)
Length = 775
Score = 29.9 bits (64), Expect = 1.9
Identities = 28/134 (20%), Positives = 60/134 (44%), Gaps = 1/134 (0%)
Frame = +2
Query: 212 LKERKEMDEAFKKAQKPWSKLLQKVERARLEYHTACKQERTAQNQERNASGDSSFSPDQV 391
+K E+D+ F KA + ++ + +E RL YH+ R + +++ +
Sbjct: 332 MKILDEIDDRFLKASECAQEVSKMLEATRLHYHSNFADNRGYVDHSARVMRVITWN-KSL 390
Query: 392 KKMADRVSKCRDEVSKNREKYQTALAEITAYNPRYIEDMTSVFDRCQQMEAQRLKFFKDV 571
+ +++ D+ S E + T L ++ A+ + ++D +Q E ++++ K V
Sbjct: 391 RGISNGEGGKDDQESDEHETHATVLDKLLAWEKK-------LYDEVKQGELMKIEYQKKV 443
Query: 572 -LFSFHKCLNISQE 610
L + HK S E
Sbjct: 444 SLLNRHKKRGASAE 457
>At5g15160.1 68418.m01776 bHLH family protein
Length = 94
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/75 (20%), Positives = 32/75 (42%)
Frame = +2
Query: 332 TAQNQERNASGDSSFSPDQVKKMADRVSKCRDEVSKNREKYQTALAEITAYNPRYIEDMT 511
++ + R AS S S DQ+ + ++ + E+ +NR + +++ YI ++
Sbjct: 2 SSSRRSRQASSSSRISDDQITDLISKLRQSIPEIRQNRRSNTVSASKVLQETCNYIRNLN 61
Query: 512 SVFDRCQQMEAQRLK 556
D Q L+
Sbjct: 62 KEADDLSDRLTQLLE 76
>At3g14180.1 68416.m01792 expressed protein similar to
6b-interacting protein 1 (NtSIP1) [Nicotiana tabacum]
GI:18149189
Length = 443
Score = 29.9 bits (64), Expect = 1.9
Identities = 22/101 (21%), Positives = 41/101 (40%)
Frame = +2
Query: 269 KLLQKVERARLEYHTACKQERTAQNQERNASGDSSFSPDQVKKMADRVSKCRDEVSKNRE 448
K + +R R A + ++ + SGDS P K+M K +D
Sbjct: 290 KRCSESKRWRFRKRNASDSDSESEAAMSDDSGDSLPPPPLSKRMKTEEKKKQDGDGVGN- 348
Query: 449 KYQTALAEITAYNPRYIEDMTSVFDRCQQMEAQRLKFFKDV 571
K++ I + Y + + + +ME +R+KF K++
Sbjct: 349 KWRELTRAIMRFGEAYEQTENAKLQQVVEMEKERMKFLKEL 389
>At2g40770.1 68415.m05030 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger (C3HC4 type RING
finger) family protein low similarity to SP|P36607 DNA
repair protein rad8 {Schizosaccharomyces pombe}; contains
Pfam profiles PF00271: Helicase conserved C-terminal
domain, PF00176: SNF2 family N-terminal domain, PF00628:
PHD-finger, PF00097: Zinc finger, C3HC4 type (RING
finger)
Length = 1648
Score = 29.9 bits (64), Expect = 1.9
Identities = 35/150 (23%), Positives = 69/150 (46%), Gaps = 13/150 (8%)
Frame = +2
Query: 302 EYHTACKQERTAQNQERNASGDSS--------FSPDQ-VKKMADRVSKCR--DEVSKN-R 445
++H A K++R N+ + + DSS +PD +KK + +C+ D V +
Sbjct: 886 DHHRASKRQRI--NELESLTHDSSETVHQREAIAPDNGLKKDGECHEECKTLDIVCDTLK 943
Query: 446 EKYQTAL-AEITAYNPRYIEDMTSVFDRCQQMEAQRLKFFKDVLFSFHKCLNISQEPSLP 622
KY +A ++++A + + V + M QR ++ D L + + S E +
Sbjct: 944 VKYLSAFNSKLSAAQHEFKKSYNQVSESLSNMGKQRSVWWLDALQLTEQNKDFSSELTR- 1002
Query: 623 QIYEEFHHTINNADSQKDLKWWANNHGVNM 712
+I E H +NN+ S ++ + HG+ +
Sbjct: 1003 KIEEALHGNLNNSSSSRESSRFRTIHGMKL 1032
>At3g49690.1 68416.m05433 myb family transcription factor contains
PFAM profile: myb DNA binding domain PF00249
Length = 310
Score = 29.5 bits (63), Expect = 2.5
Identities = 29/123 (23%), Positives = 56/123 (45%), Gaps = 4/123 (3%)
Frame = +2
Query: 167 IKNWQKETYHKSMIQLKERKEMDEAFKKAQKPWSKLLQKVERARLEYHTACKQERTAQN- 343
IKN+ K +I K+RKE+ EA + Q+ + ++ ++ +++ +Q++T
Sbjct: 105 IKNYWNTRLKKKLIN-KQRKELQEACMEQQEMMVMMKRQHQQQQIQTSFMMRQDQTMFTW 163
Query: 344 --QERNASGDSSFSPDQVKKMADRVSKCRDEVSKNREKYQTALAEITAYNPRYIED-MTS 514
N + F +Q D+ + + KN K + E+ NP + +D MT+
Sbjct: 164 PLHHHNVQVPALFM-NQTNSFCDQ-EDVKPVLIKNMVKIED--QELEKTNPHHHQDSMTN 219
Query: 515 VFD 523
FD
Sbjct: 220 AFD 222
>At1g52410.2 68414.m05915 caldesmon-related weak similarity to
Caldesmon (CDM) (Swiss-Prot:P12957) [Gallus gallus]
Length = 759
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +2
Query: 218 ERKEMDEAFKKAQKPWSKLLQKVERARLEYHTACKQERTAQNQERNA 358
E++ +D FK+ K S LL A EYH A ++ + Q E A
Sbjct: 695 EKESVDGKFKETVKELSHLLADASEAYEEYHGAVRKAKDEQAAEEFA 741
>At1g52410.1 68414.m05914 caldesmon-related weak similarity to
Caldesmon (CDM) (Swiss-Prot:P12957) [Gallus gallus]
Length = 755
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +2
Query: 218 ERKEMDEAFKKAQKPWSKLLQKVERARLEYHTACKQERTAQNQERNA 358
E++ +D FK+ K S LL A EYH A ++ + Q E A
Sbjct: 691 EKESVDGKFKETVKELSHLLADASEAYEEYHGAVRKAKDEQAAEEFA 737
>At4g26940.2 68417.m03877 galactosyltransferase family protein
contains Pfam profile: PF01762 galactosyltransferase
Length = 306
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/60 (23%), Positives = 29/60 (48%)
Frame = +2
Query: 287 ERARLEYHTACKQERTAQNQERNASGDSSFSPDQVKKMADRVSKCRDEVSKNREKYQTAL 466
ER RLE ++ + + ++ GD SPD ++ + +SK E++ R ++ +
Sbjct: 60 ERLRLESEDCDSSKKGLKRESKDILGDVYKSPDAIQTLDKTISKLETELADARAAQESIM 119
>At4g26940.1 68417.m03876 galactosyltransferase family protein
contains Pfam profile: PF01762 galactosyltransferase
Length = 407
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/60 (23%), Positives = 29/60 (48%)
Frame = +2
Query: 287 ERARLEYHTACKQERTAQNQERNASGDSSFSPDQVKKMADRVSKCRDEVSKNREKYQTAL 466
ER RLE ++ + + ++ GD SPD ++ + +SK E++ R ++ +
Sbjct: 60 ERLRLESEDCDSSKKGLKRESKDILGDVYKSPDAIQTLDKTISKLETELADARAAQESIM 119
>At2g42380.2 68415.m05245 bZIP transcription factor family protein
Length = 321
Score = 29.1 bits (62), Expect = 3.3
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 11/75 (14%)
Frame = +2
Query: 302 EYHTACKQERTAQNQERNASGDSS----FSPDQVKK-MADRVSKCRDEVSK-----NREK 451
E + CK E N SGDSS P +VK+ +A+R S R V K E+
Sbjct: 157 EVQSQCKMEPEDGTASNNNSGDSSGNRILDPKRVKRILANRQSAQRSRVRKLQYISELER 216
Query: 452 YQTAL-AEITAYNPR 493
T+L AE++ +PR
Sbjct: 217 SVTSLQAEVSVLSPR 231
>At2g26570.1 68415.m03187 expressed protein contains Pfam profile
PF05701: Plant protein of unknown function (DUF827);
weak similarity to merozoite surface protein 3 alpha
(GI:27596802) [Plasmodium vivax]
Length = 807
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/72 (27%), Positives = 36/72 (50%)
Frame = +2
Query: 182 KETYHKSMIQLKERKEMDEAFKKAQKPWSKLLQKVERARLEYHTACKQERTAQNQERNAS 361
KET +S+ +L+E +A KKA K ++ +K + +L ++ R Q+R A
Sbjct: 673 KETEMRSLEKLEEVNRDMDARKKALKEATEKAEKAKEGKLGVEQELRKWRAEHEQKRKA- 731
Query: 362 GDSSFSPDQVKK 397
GD + +K+
Sbjct: 732 GDGVNTEKNLKE 743
>At2g01100.3 68415.m00018 expressed protein
Length = 247
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = +2
Query: 197 KSMIQLKERKEMDEAFKKAQKP--WSKLLQKVERARLEYHTACKQERTAQNQERNASGDS 370
K IQ+ E K+ +K + P W + L+ A+ + T K+ + + ++R AS S
Sbjct: 4 KKFIQMVEEKKR-RVLEKQEAPLKWEQKLEAAANAKADTETKVKRSKGPKRKQRAASESS 62
Query: 371 SFS 379
S S
Sbjct: 63 SES 65
>At2g01100.2 68415.m00017 expressed protein
Length = 247
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = +2
Query: 197 KSMIQLKERKEMDEAFKKAQKP--WSKLLQKVERARLEYHTACKQERTAQNQERNASGDS 370
K IQ+ E K+ +K + P W + L+ A+ + T K+ + + ++R AS S
Sbjct: 4 KKFIQMVEEKKR-RVLEKQEAPLKWEQKLEAAANAKADTETKVKRSKGPKRKQRAASESS 62
Query: 371 SFS 379
S S
Sbjct: 63 SES 65
>At2g01100.1 68415.m00016 expressed protein
Length = 247
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = +2
Query: 197 KSMIQLKERKEMDEAFKKAQKP--WSKLLQKVERARLEYHTACKQERTAQNQERNASGDS 370
K IQ+ E K+ +K + P W + L+ A+ + T K+ + + ++R AS S
Sbjct: 4 KKFIQMVEEKKR-RVLEKQEAPLKWEQKLEAAANAKADTETKVKRSKGPKRKQRAASESS 62
Query: 371 SFS 379
S S
Sbjct: 63 SES 65
>At1g80790.1 68414.m09479 XH/XS domain-containing protein / XS zinc
finger domain-containing protein contains Pfam domains
PF03469: XH domain, PF03468: XS domain and PF03470: XS
zinc finger domain
Length = 634
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Frame = +2
Query: 134 RDRLVNDVMAQIKN---WQKETYHKSMIQLKERKEMDEAFKKAQKPWSKL-LQKVERARL 301
++RL N++ A++ N W K+ K + ER+++DE KK+ S L L +E+ +
Sbjct: 320 KERLTNELEAKMNNLKIWSKQLDKKQALTELERQKLDEDKKKSDVMNSSLQLASLEQKKT 379
Query: 302 E 304
+
Sbjct: 380 D 380
>At1g68790.1 68414.m07863 expressed protein
Length = 1085
Score = 29.1 bits (62), Expect = 3.3
Identities = 31/147 (21%), Positives = 64/147 (43%), Gaps = 5/147 (3%)
Frame = +2
Query: 23 KKWNDLIEKGPEYGTMEAAWKGSMVEAERLSDLHLSVRDRL-VNDVMAQIKNWQKETYHK 199
+K D IE E GT E + S + E S L ++ +R+ + +++K + +
Sbjct: 460 RKLKDEIE---EIGT-ETTKQESRIREEHES-LRITKEERVEFLRLQSELKQQIDKVKQE 514
Query: 200 SMIQLKERKEMDEAFKKAQKPWSKLLQKVERARLEYHTACKQERTAQN----QERNASGD 367
+ LKER+E+ + ++ +K W L +K E + ++ +N ++ +
Sbjct: 515 EELLLKEREELKQDKERFEKEWEALDKKRANITREQNEVAEENEKLRNLQISEKHRLKRE 574
Query: 368 SSFSPDQVKKMADRVSKCRDEVSKNRE 448
S D +K+ D V ++ + E
Sbjct: 575 EMTSRDNLKRELDGVKMQKESFEADME 601
>At5g55820.1 68418.m06956 expressed protein
Length = 1826
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Frame = +2
Query: 179 QKETYHKSMIQLKERKEMDEAFKKAQKPWSKLLQK----VERARLEYHTACKQERTAQNQ 346
++E K I+ K++KE D K+A+ W + ++K ER R E+ A ++ + +
Sbjct: 1554 EQENLKKQEIE-KKKKEEDRKKKEAEMAWKQEMEKKKKEEERKRKEFEMADRKRQREEED 1612
Query: 347 ER 352
+R
Sbjct: 1613 KR 1614
>At5g07660.1 68418.m00877 structural maintenance of chromosomes
(SMC) family protein similar to SMC-like protein (MIM)
[Arabidopsis thaliana] GI:5880614; contains Pfam profile
PF02463: RecF/RecN/SMC N terminal domain
Length = 1058
Score = 28.7 bits (61), Expect = 4.4
Identities = 32/154 (20%), Positives = 70/154 (45%), Gaps = 4/154 (2%)
Frame = +2
Query: 227 EMDEAFKKAQKPWSKLLQKVERARLEYHTACKQERTAQNQERNASGDSSFSPD-QVKKMA 403
EM++ K +K ++LL+K++ +E+ Q+ + ++ + + D Q+K+
Sbjct: 212 EMEKTIKPIEKEINELLEKIKN--MEHVEEITQQ--VLHLKKKLAWSWVYDVDRQLKEQN 267
Query: 404 DRVSKCRDEVSKNREKYQTALAEITAYNPRYIEDMTSVFDRCQQMEAQRLKFFKDVLFSF 583
+++ K ++ V + K L E+ + E V C E+ +K +++
Sbjct: 268 EKIVKFKERVPTCQNKIDRKLGEVESLRVSLTEKKAQV--ACLIDESTAMK--REL---- 319
Query: 584 HKCLNISQEPSLPQ---IYEEFHHTINNADSQKD 676
+CL S + + + + EE+HH +N KD
Sbjct: 320 -ECLRQSMKKAAREKIALEEEYHHKCSNIQKIKD 352
>At4g16590.1 68417.m02510 glucosyltransferase-related low similarity
to beta-(1-3)-glucosyl transferase [Bradyrhizobium
japonicum] GI:3687658
Length = 401
Score = 28.7 bits (61), Expect = 4.4
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -2
Query: 100 FHHATLPSSFHCAVFWSLFDQII 32
FH P SF+ +FW LF+ ++
Sbjct: 283 FHTLATPRSFYLVIFWVLFENVM 305
>At3g54670.1 68416.m06049 structural maintenance of chromosomes
(SMC) family protein similar to SMC1 protein [Bos
taurus] GI:4235253, 14S cohesin SMC1 subunit (SMC
protein) [Xenopus laevis] GI:3328231; contains Pfam
profiles PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1257
Score = 28.7 bits (61), Expect = 4.4
Identities = 32/175 (18%), Positives = 73/175 (41%), Gaps = 2/175 (1%)
Frame = +2
Query: 152 DVMAQIKNWQKETYHKSMIQLKERKEMDEAFKKAQKPWSKLLQKVERARLEYHTACKQER 331
DVM +++ +++E + + Q K KE+ + KK + SK L K++ L + + +
Sbjct: 261 DVMRELEKFEREAGKRKVEQAKYLKEIAQREKKIAEKSSK-LGKIQPELLRFKEEIARIK 319
Query: 332 TAQNQERNASGDSSFSPDQVKKMADRVSKCRDEVSKNREKYQTALAEITAYNPRYIEDMT 511
R + K +++ K E++K E + + + P +
Sbjct: 320 AKIETNRKDVDKRKKEKGKHSKEIEQMQKSIKELNKKMELFNKKRQDSSGKLPMLDSQLQ 379
Query: 512 SVFDRCQQ--MEAQRLKFFKDVLFSFHKCLNISQEPSLPQIYEEFHHTINNADSQ 670
F ++ M+ +L+ +VL + ++ +L + Y++ + N+ D Q
Sbjct: 380 DYFRLKEEAGMKTIKLRDEHEVL-ERQRRTDLEALRNLEENYQQLINRKNDLDEQ 433
>At2g42380.1 68415.m05244 bZIP transcription factor family protein
Length = 310
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/64 (26%), Positives = 27/64 (42%)
Frame = +2
Query: 302 EYHTACKQERTAQNQERNASGDSSFSPDQVKKMADRVSKCRDEVSKNREKYQTALAEITA 481
E + CK E N SGDSS + K R+ R ++R + ++E+
Sbjct: 157 EVQSQCKMEPEDGTASNNNSGDSSGNRILDPKRVKRILANRQSAQRSRVRKLQYISELEL 216
Query: 482 YNPR 493
+PR
Sbjct: 217 LSPR 220
>At5g45840.1 68418.m05639 leucine-rich repeat transmembrane protein
kinase, putative and genscan+
Length = 668
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/52 (25%), Positives = 26/52 (50%)
Frame = +2
Query: 473 ITAYNPRYIEDMTSVFDRCQQMEAQRLKFFKDVLFSFHKCLNISQEPSLPQI 628
+T Y +E + V C +++ + K V+ + +NISQE + P++
Sbjct: 601 LTTYKEEELEAICDVARHCLKLDESQRPKMKYVVQQLKEVINISQEQATPRL 652
>At4g11420.1 68417.m01840 eukaryotic translation initiation factor 3
subunit 10 / eIF-3 theta / eIF3a (TIF3A1) identical to
eukaryotic translation initiation factor 3 subunit 10
(eIF-3 theta) (Eukaryotic translation initiation factor
3 large subunit) (eIF3a) (p114). [Arabidopsis thaliana]
SWISS-PROT:Q9LD55
Length = 987
Score = 28.3 bits (60), Expect = 5.8
Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 1/116 (0%)
Frame = +2
Query: 209 QLKERKEMDEAFKKAQKPWSKLLQKVERARLEYHTACKQERTAQNQERNASGDSSFSPDQ 388
QLKER+EM+ KK QK +K + +ERA+ E + A Q R + +Q
Sbjct: 670 QLKERQEME---KKLQK-LAKTMDYLERAKREEAAPLIE---AAYQRRLVEEREFYEREQ 722
Query: 389 VKKMADRVSKCRDEVS-KNREKYQTALAEITAYNPRYIEDMTSVFDRCQQMEAQRL 553
+++ +SK R E K + + L + + I + FDR + +R+
Sbjct: 723 QREV--ELSKERHESDLKEKNRLSRMLGNKEIFQAQVISRRQAEFDRIRTEREERI 776
>At3g01300.1 68416.m00039 protein kinase, putative similar to
protein kinase APK1A [Arabidopsis thaliana]
Swiss-Prot:Q06548
Length = 490
Score = 28.3 bits (60), Expect = 5.8
Identities = 19/64 (29%), Positives = 32/64 (50%)
Frame = +2
Query: 365 DSSFSPDQVKKMADRVSKCRDEVSKNREKYQTALAEITAYNPRYIEDMTSVFDRCQQMEA 544
+ FS +K+ ++C SK R K + + E+ P +++DM S Q M+A
Sbjct: 380 EGHFSVKGAQKVTQLAAQCLSRDSKIRPK-MSEVVEVLKPLP-HLKDMASASYYFQTMQA 437
Query: 545 QRLK 556
+RLK
Sbjct: 438 ERLK 441
>At2g38770.1 68415.m04760 expressed protein
Length = 1509
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/50 (22%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Frame = +2
Query: 128 SVRDRLVNDV---MAQIKNWQKETYHKSMIQLKERKEMDEAFKKAQKPWS 268
S+ D +VN++ +A +++W +Y + ++L + ++ + +K++ K W+
Sbjct: 191 SLEDAVVNEIVLSLAGLQSWHSLSYGRFQMELCLQPDLIKKWKRSSKKWA 240
>At5g37160.1 68418.m04461 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 871
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -3
Query: 183 FCQFFICAITSFTSLSLTLRWRSESRSASTMLPFQAASIVPYSGPFSIKSFH 28
+ Q F+ + T L +RS S+S + + ++ YSG SIK FH
Sbjct: 53 YSQCFVPHLLEETRTELFSSFRSLSKSPVSRILSVETKVIEYSGRSSIKWFH 104
>At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); rab11 binding protein, Bos
taurus, EMBL:AF117897
Length = 905
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = -1
Query: 356 RFFPDSALFFLVCKPCGTLAWRVQPSEVISTMVSGPS*MLHP 231
+F PDS L + C W VQ E++S M G +HP
Sbjct: 418 KFSPDSHLLASAGEDCAIHVWEVQECEIMS-MNEGSLTPIHP 458
>At3g15960.1 68416.m02018 DNA mismatch repair MutS family protein
contains Pfam profile PF05188: MutS domain II
Length = 474
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +2
Query: 218 ERKEMDEAFKKAQKPWSKLLQKVERARLEYHTACKQERTAQNQE 349
E+ E+D F+K S+++++ +A EYH ++ + Q E
Sbjct: 410 EKYEVDMTFEKTVANLSRVIEEASQAYEEYHVVVRKWKEEQASE 453
>At3g05090.2 68416.m00553 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to uncharacterized KIAA1449 protein
(gi:7959157) [Homo sapiens]
Length = 753
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +1
Query: 397 NGRSCIEMSRRSVKEPRKIPDSSSRDHGVQPSIHRGHDFSI 519
NG + S R+V I SS HG P+I +GH S+
Sbjct: 176 NGANGPVTSLRTVGSSNNISVQSSPSHGYTPTIAKGHKESV 216
>At3g05090.1 68416.m00552 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to uncharacterized KIAA1449 protein
(gi:7959157) [Homo sapiens]
Length = 753
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +1
Query: 397 NGRSCIEMSRRSVKEPRKIPDSSSRDHGVQPSIHRGHDFSI 519
NG + S R+V I SS HG P+I +GH S+
Sbjct: 176 NGANGPVTSLRTVGSSNNISVQSSPSHGYTPTIAKGHKESV 216
>At2g45460.1 68415.m05654 forkhead-associated domain-containing
protein / FHA domain-containing protein
Length = 915
Score = 27.9 bits (59), Expect = 7.6
Identities = 30/136 (22%), Positives = 62/136 (45%), Gaps = 5/136 (3%)
Frame = +2
Query: 89 SMVEAERLSDLHLSVRDRLVNDVMAQIKNWQKETYHKSMIQLKE-----RKEMDEAFKKA 253
S+VE L +S L + QIK +++H +I+L++ +KE+ + K +
Sbjct: 261 SIVEHHESDYLSISTEISLHLQEIKQIKESTAKSFHNELIELRDQLDTKQKELAQVNKLS 320
Query: 254 QKPWSKLLQKVERARLEYHTACKQERTAQNQERNASGDSSFSPDQVKKMADRVSKCRDEV 433
+ + + + ER T + Q+Q+ + + ++K D +E
Sbjct: 321 AEQKNSIDELGERVSASLQTLSEANEVIQSQKASIA--------ELKTGLD------EER 366
Query: 434 SKNREKYQTALAEITA 481
++ RE+ +TA+AE+ A
Sbjct: 367 NQRREERETAIAELKA 382
>At2g22610.1 68415.m02680 kinesin motor protein-related
Length = 1093
Score = 27.9 bits (59), Expect = 7.6
Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 4/121 (3%)
Frame = +2
Query: 101 AERLSDLHLSVRDRLVN--DVMAQIKNWQKETYHKSMIQL--KERKEMDEAFKKAQKPWS 268
+E LS L+ + R R V Q+ + + K+M++ +E + DE+ KK ++
Sbjct: 734 SETLSSLNFATRVRGVELGPARKQVDTGEIQKL-KAMVEKARQESRSKDESIKKMEENIQ 792
Query: 269 KLLQKVERARLEYHTACKQERTAQNQERNASGDSSFSPDQVKKMADRVSKCRDEVSKNRE 448
L K + Y + ++ + QNQ + S Q ++ +R+ K RDE+ N +
Sbjct: 793 NLEGKNKGRDNSYRSLQEKNKDLQNQLDSVHNQSE---KQYAQLQERL-KSRDEICSNLQ 848
Query: 449 K 451
+
Sbjct: 849 Q 849
>At1g08840.1 68414.m00984 DNA replication helicase, putative similar
to helicase [Xenopus laevis] gi|18845092|gb|AAL79550
Length = 1296
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = +2
Query: 332 TAQNQERNASGDSSFSPDQVKKMADRVSKCRDEVSKNREKYQTAL 466
TA +N G S+ PD+ K M ++++ ++SKN +++ +
Sbjct: 68 TAVLTPQNPLGTSNEKPDESKDMDQQLTEASPKISKNLKRFSPGM 112
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,856,571
Number of Sequences: 28952
Number of extensions: 354265
Number of successful extensions: 1383
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 1332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1383
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -