Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0133
         (688 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q22N16 Cluster: KOW motif family protein; n=1; Tetrahym...    36   0.70 
UniRef50_Q8IHW8 Cluster: Putative uncharacterized protein; n=2; ...    35   1.6  
UniRef50_Q6CD47 Cluster: Similar to DEHA0F03135g Debaryomyces ha...    34   2.8  
UniRef50_Q9MTE3 Cluster: Ribosomal protein S3; n=1; Toxoplasma g...    33   8.6  

>UniRef50_Q22N16 Cluster: KOW motif family protein; n=1; Tetrahymena
           thermophila SB210|Rep: KOW motif family protein -
           Tetrahymena thermophila SB210
          Length = 778

 Score = 36.3 bits (80), Expect = 0.70
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +3

Query: 528 CKFVHYYDCILYFYNHKFR*DYTIKNIN 611
           C+ +H Y  +++ +N KFR  YT++NIN
Sbjct: 627 CQVIHVYKSLVFLFNPKFRDTYTVENIN 654


>UniRef50_Q8IHW8 Cluster: Putative uncharacterized protein; n=2;
            Plasmodium|Rep: Putative uncharacterized protein -
            Plasmodium falciparum (isolate 3D7)
          Length = 2213

 Score = 35.1 bits (77), Expect = 1.6
 Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
 Frame = +2

Query: 17   FSNTGMSYYSTNMYKK-RPIRS*LNCKDLISLFLNCVYIICDVLNTLQLSRSQMIKVNYS 193
            +SN  +    + +Y K   + S LNCK +++ FLN   +ICD +N ++L  +    +NY+
Sbjct: 1520 YSNFFIDQLLSPLYIKIETLNSILNCK-MLACFLNSTSLICDNINYIKLVINNNYNINYN 1578

Query: 194  S 196
            +
Sbjct: 1579 N 1579


>UniRef50_Q6CD47 Cluster: Similar to DEHA0F03135g Debaryomyces
           hansenii IPF 8881.1; n=1; Yarrowia lipolytica|Rep:
           Similar to DEHA0F03135g Debaryomyces hansenii IPF 8881.1
           - Yarrowia lipolytica (Candida lipolytica)
          Length = 1699

 Score = 34.3 bits (75), Expect = 2.8
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +2

Query: 353 VKKAAAWLWPWDCRRPLATVITHHQTVC 436
           +KKAA W++P+  R  +AT I  H TVC
Sbjct: 506 LKKAAEWMFPYLVRLTVATAIQGHDTVC 533


>UniRef50_Q9MTE3 Cluster: Ribosomal protein S3; n=1; Toxoplasma
           gondii|Rep: Ribosomal protein S3 - Toxoplasma gondii
          Length = 224

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +3

Query: 531 KFVHYYDCILYFYNHKFR*DYTIKNINKGKQYLIYSQFDN-RRQEQKFH 674
           KF    +CI YFYN+  +    IK IN  K+  IY + DN    +QK++
Sbjct: 68  KFQLNINCIFYFYNYFLKLKIFIKEINNIKR--IYKKIDNLNNLKQKYY 114


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 575,258,148
Number of Sequences: 1657284
Number of extensions: 9861582
Number of successful extensions: 20554
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20546
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53719013270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)