Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0133
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    27   3.4  
SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces p...    26   4.4  
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po...    26   4.4  
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    25   7.8  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    25   7.8  

>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +2

Query: 86  NCKDLISLFLNCVYIICDVLNTLQLSRSQMIKVNYSSTGILFYYWPT 226
           +C D+ S+  NCVY+      +     S  ++  +S   ++FYY  T
Sbjct: 738 HCTDMDSMD-NCVYLCIQKFESYGWGASSEMECYFSYCSLIFYYQAT 783


>SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 352

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 374 LWPWDCRRPLATVITHHQTVCSSAYTDNKKVTKL 475
           ++  DC  PL TV T  + +C    ++  K+ KL
Sbjct: 162 VYAMDCVHPLLTVATAERNICVINLSEPTKIFKL 195


>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 363

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -2

Query: 174 ICDRESCKVFKTSQIIYTQFKKSEIKSLQFNYDR 73
           +C +   + F T +++Y   K S + S  +N DR
Sbjct: 96  VCSQYQVQGFPTIKLVYPSSKGSSLSSTDYNGDR 129


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +2

Query: 344 LWRVKKAAAWLW 379
           LW V+K A WLW
Sbjct: 291 LWDVRKPATWLW 302


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 383 WDCRRPLATVITHHQTVCSSAYTDNKKVTKLFE 481
           W+ RR +   I H Q V  S  T + K T++ +
Sbjct: 580 WESRRKIMDAIQHSQVVVISGETGSGKSTQVVQ 612


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,491,152
Number of Sequences: 5004
Number of extensions: 44848
Number of successful extensions: 117
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)