Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0133
         (688 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92822-1|CAB07300.4|  311|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AY466439-1|AAS45709.1|  311|Caenorhabditis elegans SID-2 protein.      29   3.1  
AF125963-4|AAD14745.2|  408|Caenorhabditis elegans F-box a prote...    27   9.5  

>Z92822-1|CAB07300.4|  311|Caenorhabditis elegans Hypothetical
           protein ZK520.2 protein.
          Length = 311

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 607 LTKANNI*FILNLTTDVKNKSFTIN 681
           ++   N+ FIL +TTD KN +FT N
Sbjct: 76  ISDLKNVTFILEVTTDTKNCTFTAN 100


>AY466439-1|AAS45709.1|  311|Caenorhabditis elegans SID-2 protein.
          Length = 311

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 607 LTKANNI*FILNLTTDVKNKSFTIN 681
           ++   N+ FIL +TTD KN +FT N
Sbjct: 76  ISDLKNVTFILEVTTDTKNCTFTAN 100


>AF125963-4|AAD14745.2|  408|Caenorhabditis elegans F-box a protein
           protein 214 protein.
          Length = 408

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +2

Query: 92  KDLISLF-LNCVYIICDVLNTLQLSRSQMIKVNYSSTGILFYYWPTAS 232
           +DL+  F L    I  D+ +T  +++S++  ++YS    + Y +PT++
Sbjct: 97  RDLVDNFDLKTGSIALDIFDTGTIAQSEVFYIDYSDENGIVYQFPTSA 144


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,621,619
Number of Sequences: 27780
Number of extensions: 245369
Number of successful extensions: 463
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)