Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0133
         (688 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    25   0.68 
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   2.7  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   3.6  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   4.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.3  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 44  STNMYKKRPIRS*LNCKDLISLFLNCVYIICDVL 145
           S NM KK P+R      ++ S+F+    +IC +L
Sbjct: 254 SDNMSKKSPVRKATLFLNMASVFMRIFNLICMML 287


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 6/20 (30%), Positives = 14/20 (70%)
 Frame = +1

Query: 235 YCLPIAILLMVPQLMVSHII 294
           YC+P+ +++     +VSH++
Sbjct: 220 YCIPMILIIYYYSQIVSHVV 239


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 205 IVLLLAYCQLYC 240
           IV+L  YC+LYC
Sbjct: 206 IVMLGIYCRLYC 217


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = +2

Query: 350 RVKKAAAWLWPWDCRRPLATVITHHQ 427
           R+  + A   PW C+R     + H Q
Sbjct: 158 RITASEALKHPWICQRERVASVVHRQ 183


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 634 ILNLTTDVKNKSFTINS 684
           ILNL TD+ + S +I+S
Sbjct: 364 ILNLRTDISSSSSSISS 380


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,160
Number of Sequences: 438
Number of extensions: 3432
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)