Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0131
         (640 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1407 - 33345230-33345372,33345492-33345626,33346559-33346904     42   5e-04
04_04_0888 - 29098068-29098177,29098260-29098347,29099412-290994...    37   0.016
03_05_0156 + 21342982-21343186,21343326-21343375                       35   0.063
03_05_0059 - 20359480-20359552,20359690-20359777,20360255-203603...    35   0.063
05_02_0012 - 5575574-5575849,5575889-5575954,5576103-5576926,557...    33   0.14 
02_03_0415 + 18805541-18805610,18805962-18806128,18806616-188066...    28   7.2  

>04_04_1407 - 33345230-33345372,33345492-33345626,33346559-33346904
          Length = 207

 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 32/88 (36%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
 Frame = +2

Query: 89  IGFAYAATVAAGGVMGYAKAGSIPSLGAGIIFGSILGVGAYQLSQDP-SNYXXXXXXXXX 265
           I  AYAA V AGG MGY K+GS  SL AG I   +L     QL   P             
Sbjct: 106 ITLAYAALVGAGGAMGYMKSGSQKSLAAGGISALVLYFVHTQLPVRPVFASSIGLGISAA 165

Query: 266 XXXXXXYRYYNSRKFMPAGLMFCLSVGM 349
                  R+  S K  PAG++  +S+ M
Sbjct: 166 LLSVMGSRFKKSGKIFPAGVVSLVSLVM 193


>04_04_0888 -
           29098068-29098177,29098260-29098347,29099412-29099450,
           29099722-29099786,29099863-29100082
          Length = 173

 Score = 36.7 bits (81), Expect = 0.016
 Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 16/99 (16%)
 Frame = +2

Query: 98  AYAATVAAGGVMGYAKAGSIPSLGAGIIFGSILGVG------------AYQLSQDPSNYX 241
           AY A +  GG   Y ++GS  S+  G+   +++G+             AY L Q P    
Sbjct: 61  AYGALLLGGGAFAYVRSGSKGSIFGGLSGSALMGISFIGLLGGQNRILAYYLMQSPETKA 120

Query: 242 XXXXXXXXXXXXXX----YRYYNSRKFMPAGLMFCLSVG 346
                              R YN+RK +P+GL+  LS+G
Sbjct: 121 LGDAVGFGSAFLFASVFGIRLYNTRKLVPSGLLLVLSLG 159


>03_05_0156 + 21342982-21343186,21343326-21343375
          Length = 84

 Score = 34.7 bits (76), Expect = 0.063
 Identities = 18/32 (56%), Positives = 18/32 (56%)
 Frame = +2

Query: 101 YAATVAAGGVMGYAKAGSIPSLGAGIIFGSIL 196
           Y A V  GGV GY K GS  SL AG  FG  L
Sbjct: 10  YGAAVLVGGVAGYLKRGSKASLAAGGGFGGAL 41


>03_05_0059 -
           20359480-20359552,20359690-20359777,20360255-20360326,
           20361765-20361963
          Length = 143

 Score = 34.7 bits (76), Expect = 0.063
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +2

Query: 101 YAATVAAGGVMGYAKAGSIPSLGAGIIFGSIL 196
           Y   V AGGV+GYA+ GS  SL  G   G++L
Sbjct: 10  YGFAVLAGGVLGYARRGSTASLAGGAGAGALL 41


>05_02_0012 -
           5575574-5575849,5575889-5575954,5576103-5576926,
           5577333-5577405,5577936-5577983
          Length = 428

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
 Frame = +2

Query: 287 RYYNSRKFMPAGLMFCLSVGMFTKLLLKNVGASRMPIKSG*T*LIYESTIIKA--GNLTF 460
           RYYN +K  P G     +V +FT++ LKN+  + +P+KS    L +  T+ +    ++ F
Sbjct: 42  RYYNYQKGQPYGAG-ANNVEIFTRVPLKNMMPASVPLKSSSLSLCHRQTLSRPPHHSVLF 100

Query: 461 GQ*LVNQKNELLTL 502
               V Q+N++  L
Sbjct: 101 SPNGVKQRNQMTLL 114


>02_03_0415 +
           18805541-18805610,18805962-18806128,18806616-18806645,
           18807459-18807515,18808268-18808337,18808915-18810998
          Length = 825

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +2

Query: 134 GYAKAGSIPSLGAGIIFGS 190
           G  + GSIPSLGAG+  GS
Sbjct: 223 GLTRHGSIPSLGAGLQMGS 241


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,877,183
Number of Sequences: 37544
Number of extensions: 247886
Number of successful extensions: 538
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)