Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0131
         (640 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040655-1|AAK84577.2|  678|Caenorhabditis elegans Hypothetical ...    29   3.7  
Z54342-5|CAA91147.1|  457|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>AF040655-1|AAK84577.2|  678|Caenorhabditis elegans Hypothetical
           protein T24E12.5 protein.
          Length = 678

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +2

Query: 74  MGLDIIGFAYAATVAAGGVMGYAKAGSIPSLGAGIIFGSILGVGA 208
           +GL       A   +A GV+  + AG+  +  AG++  S  GVGA
Sbjct: 21  VGLSAASATGAGVASAAGVVAASAAGTGAASTAGVVAASAAGVGA 65


>Z54342-5|CAA91147.1|  457|Caenorhabditis elegans Hypothetical
           protein C08H9.10 protein.
          Length = 457

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 20/60 (33%), Positives = 29/60 (48%)
 Frame = +2

Query: 284 YRYYNSRKFMPAGLMFCLSVGMFTKLLLKNVGASRMPIKSG*T*LIYESTIIKAGNLTFG 463
           ++Y     F PA L     VG F +   +N   +R  ++   T +IY   I K GN+TFG
Sbjct: 94  FKYSTETIFPPAALCGKRIVGYFAEF--ENTALTRKQLQML-THIIYLFAIPKNGNMTFG 150


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,465,775
Number of Sequences: 27780
Number of extensions: 229500
Number of successful extensions: 489
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)