Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0131
(640 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g33265.1 68414.m04113 expressed protein contains Pfam profile... 44 9e-05
At3g43520.1 68416.m04614 expressed protein contains Pfam profile... 40 0.001
At2g26240.1 68415.m03150 expressed protein contains Pfam profile... 37 0.010
At3g57280.1 68416.m06376 expressed protein contains Pfam profile... 32 0.28
At3g20510.1 68416.m02597 expressed protein contains Pfam profile... 31 0.49
At2g38550.1 68415.m04736 expressed protein contains Pfam profile... 31 0.49
At1g50740.1 68414.m05706 expressed protein contains Pfam profile... 29 3.4
At1g68980.1 68414.m07894 pentatricopeptide (PPR) repeat-containi... 28 6.0
At5g56660.1 68418.m07073 IAA-amino acid hydrolase 2 (ILL2) ident... 27 7.9
At5g56650.1 68418.m07072 IAA-amino acid hydrolase 3 (IAR3) (ILL1... 27 7.9
>At1g33265.1 68414.m04113 expressed protein contains Pfam profile
PF03647: Uncharacterised protein family (UPF0136);
supporting cDNA gi|23198247|gb|BT000332.1|
Length = 177
Score = 44.0 bits (99), Expect = 9e-05
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Frame = +2
Query: 86 IIGFAYAATVAAGGVMGYAKAGSIPSLGAGIIFGSILGVGAYQLSQDPSNY----XXXXX 253
++ Y + GG+ Y+K+GS SL G+ GS+L AY L++ P
Sbjct: 62 VVSATYGVLLLGGGLFAYSKSGSKGSLFGGLT-GSVLMASAYFLTKSPETRVLGDTIGLG 120
Query: 254 XXXXXXXXXXYRYYNSRKFMPAGLMFCLSVGMFT 355
+R +SRK +PAG + LS+GM +
Sbjct: 121 AAFLFSSVFGFRLASSRKPVPAGPLLLLSIGMLS 154
>At3g43520.1 68416.m04614 expressed protein contains Pfam profile
PF03647: Uncharacterised protein family (UPF0136)
Length = 240
Score = 40.3 bits (90), Expect = 0.001
Identities = 29/84 (34%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Frame = +2
Query: 101 YAATVAAGGVMGYAKAGSIPSLGAGIIFGSILGVGAYQLSQDPSNYXXXXXXXXXXXXXX 280
YA V GG+MGY K+GS SL AG + ++L Y SQ P+
Sbjct: 144 YAFLVGVGGLMGYLKSGSQKSLLAGGLSAAVL---LYVFSQLPTKPVLASTVGVVMAGAL 200
Query: 281 XY----RYYNSRKFMPAGLMFCLS 340
Y RY S+K PAG++ +S
Sbjct: 201 MYVMGTRYMRSKKIFPAGVVSIMS 224
>At2g26240.1 68415.m03150 expressed protein contains Pfam profile
PF03647: Uncharacterised protein family (UPF0136)
Length = 108
Score = 37.1 bits (82), Expect = 0.010
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Frame = +2
Query: 98 AYAATVAAGGVMGYAKAGSIPSLGAGIIFGSILGVGAYQLSQDPSN----YXXXXXXXXX 265
AYA+ + GG+MGY K GS SL AG G + Y ++ P N
Sbjct: 12 AYASLLGVGGLMGYLKRGSKISLVAG---GGSAALFYYVYTELPGNPVLASSIGIVGSAA 68
Query: 266 XXXXXXYRYYNSRKFMPAGLMFCLSVGM 349
RY +RK +PAGL+ +S+ M
Sbjct: 69 LTGMMGSRYLRTRKVVPAGLVSVVSLVM 96
>At3g57280.1 68416.m06376 expressed protein contains Pfam profile
PF03647: Uncharacterised protein family (UPF0136)
Length = 226
Score = 32.3 bits (70), Expect = 0.28
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +2
Query: 92 GFAYAATVAAGGVMGYAKAGSIPSLGAGIIFG 187
G Y V +GG++G+A + ++ SL G+++G
Sbjct: 106 GIPYGGLVVSGGLLGFAFSRNLTSLSTGVLYG 137
>At3g20510.1 68416.m02597 expressed protein contains Pfam profile
PF03647: Uncharacterised protein family (UPF0136)
Length = 119
Score = 31.5 bits (68), Expect = 0.49
Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 8/109 (7%)
Frame = +2
Query: 101 YAATVAAGGVMGYAKAGSIPSL--GAG----IIFGSILGVGAYQLSQDPS-NYXXXXXXX 259
Y + GG +GY K GSI S GAG +I + + A++ ++ +
Sbjct: 10 YGMLLIGGGFIGYMKKGSITSFAGGAGTGLLLILAGYISLKAFEKKKNSTIAMVLQTVIA 69
Query: 260 XXXXXXXXYRYYNSRKFMPAGLMFCLSVGMFTKLLLK-NVGASRMPIKS 403
RY + K MPAGL+ +S M + K G ++ P K+
Sbjct: 70 AALTLVMGQRYLLTGKIMPAGLVAGISALMTCFYVYKIATGGNKFPAKA 118
>At2g38550.1 68415.m04736 expressed protein contains Pfam profile
PF03647: Uncharacterised protein family (UPF0136)
Length = 335
Score = 31.5 bits (68), Expect = 0.49
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 89 IGFAYAATVAAGGVMGYAKAGSIPSLGAGIIFGSIL 196
+G Y + GG + + +GSIP++ G+I G L
Sbjct: 207 VGIPYGLLLLVGGFINFMVSGSIPAIRFGVILGGAL 242
>At1g50740.1 68414.m05706 expressed protein contains Pfam profile
PF03647: Uncharacterised protein family (UPF0136)
Length = 119
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 101 YAATVAAGGVMGYAKAGSIPSLGAGIIFGSILGVGAY 211
Y + GG +GY K GSI SL G G ++ + +
Sbjct: 10 YGILLIVGGFIGYLKKGSIASLAGGAGTGLLVVLAGF 46
>At1g68980.1 68414.m07894 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 619
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +2
Query: 80 LDIIGFAYAATVAAGGVMGYAKAGSIPSLGAGIIFGSILGVG 205
+D +GFA + + + GY K+G + S + +I S+ GVG
Sbjct: 249 MDGLGFASRRILYSSMISGYVKSGDLDS-ASDVILCSLKGVG 289
>At5g56660.1 68418.m07073 IAA-amino acid hydrolase 2 (ILL2)
identical to IAA-amino acid hydrolase homolog 2
precursor [Arabidopsis thaliana] SWISS-PROT:P54970
Length = 439
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +2
Query: 65 IITMGLDIIGFAYAATVAAGGVMGYAKAGSIP 160
+I L++IG Y VA GV+GY G P
Sbjct: 74 LIRSELELIGIKYRYPVAITGVIGYIGTGEPP 105
>At5g56650.1 68418.m07072 IAA-amino acid hydrolase 3 (IAR3) (ILL1)
identical to IAA-amino acid hydrolase 3 [Arabidopsis
thaliana] SWISS-PROT:P54969
Length = 438
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 80 LDIIGFAYAATVAAGGVMGYAKAGSIP 160
LD+IG Y VA G++GY G P
Sbjct: 78 LDLIGVKYRFPVAITGIIGYIGTGEPP 104
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,626,113
Number of Sequences: 28952
Number of extensions: 210366
Number of successful extensions: 557
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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