Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0130
(702 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 32 0.069
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo... 29 0.85
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 28 1.1
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p... 27 2.0
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe... 27 2.6
SPCC1827.08c |pof7|SPCC70.11c|F-box protein Pof7|Schizosaccharom... 27 3.4
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 27 3.4
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ... 27 3.4
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 3.4
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 26 6.0
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 26 6.0
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 26 6.0
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 25 7.9
SPBC409.06 |uch2||ubiquitin C-terminal hydrolase Uch2|Schizosacc... 25 7.9
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 32.3 bits (70), Expect = 0.069
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 2/103 (1%)
Frame = +1
Query: 196 SRQLAEPSHWDSLNSPLIQDEGDGKTLKLRFDVSQYTP--EEIVVKTVDNKLLVHAKHEE 369
SRQ++ + W +++ L D +L +++ S P E + K L AK
Sbjct: 235 SRQVSAHNFWPKISASLGFPSPDAISLLIQYYNSYLLPYEEAWLAAQQQQKSLQQAKANH 294
Query: 370 KSDTKSVYREYNREFLLPKGTNPEAIKSSLSRDGVLTVEAPLP 498
++ +S + Y ++ P T PEA+ ++ S G L ++P P
Sbjct: 295 SANVQSRPKNYPQK---PVQTTPEAVHANGSMHGSLHSKSPSP 334
>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
Vps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 28.7 bits (61), Expect = 0.85
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = -2
Query: 452 DLMASGFVPLGNKNSLLYSLYTDFVSDFSSCLAWTSNLLSTVLTTISSG 306
+L + G P+G+ +S++ +L TDF +++ + + S LS T +S G
Sbjct: 327 ELHSLGDTPVGDNSSIVLNLITDFCNEYRTVVDGRSEELSA--TELSGG 373
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 28.3 bits (60), Expect = 1.1
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +2
Query: 413 FCCPREQILR--PLSLRCPGTVCLPWKRHCHNSPSRTGTFLSRSTERSHHSP 562
F CP L P++L C GTVC R+ ++S S SR +H P
Sbjct: 17 FICPGCNCLPDWPVTLPCGGTVCRKCFRNAYSSESSGKVSPSRCCFYNHKKP 68
>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 669
Score = 27.5 bits (58), Expect = 2.0
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Frame = +1
Query: 220 HWDSLNSPLIQDEG---DGKTLKLRFDVSQYTPEEI-----VVKTVDNKLLVHAKHEEKS 375
+++S P+ DEG D + + RF + + I ++ V + + + H ++S
Sbjct: 305 NFNSYIKPVAGDEGRVEDEEFEENRFSIEDIEIDSIPAVRRLLGDVMSDIPYYMSHHKES 364
Query: 376 DTKSVYREYNREFLLPKGTNP 438
KSV RE NR + L K NP
Sbjct: 365 IIKSVIREANRVYHLWKDCNP 385
>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 520
Score = 27.1 bits (57), Expect = 2.6
Identities = 23/83 (27%), Positives = 39/83 (46%)
Frame = +1
Query: 289 DVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLPKGTNPEAIKSSLSRD 468
D S T EE+V + D K L K+D +S + E ++ ++ + +P ++ SLS D
Sbjct: 109 DHSSDTEEEVVSE--DQKQL------NKTDDESTFIESHQIYIQGETKSPSSVSQSLSGD 160
Query: 469 GVLTVEAPLPQLAITDRNIPIQK 537
L + + N PI+K
Sbjct: 161 PSLKPAEVFDRKQSAEINSPIEK 183
>SPCC1827.08c |pof7|SPCC70.11c|F-box protein
Pof7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 361
Score = 26.6 bits (56), Expect = 3.4
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +1
Query: 346 LVHAKHEEKSDTKSVYREYNREFLLPKGTNPEAIKSSLSRDGVLTVEA-PLPQL 504
L H HE D +S+YR R L + E + S S + +LTV + P P L
Sbjct: 49 LAHKVHE---DVESIYRRLERLQLCKRNEEEEMLNSDAS-EAMLTVSSVPSPTL 98
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 46 RISSIRERFDAEMRKMEEEMSKFRSELMNRESN 144
RI + R R + R++EEE + + L+ R+SN
Sbjct: 203 RIENARRRKNQSERRLEEEKMETINRLLKRQSN 235
>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 668
Score = 26.6 bits (56), Expect = 3.4
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = +2
Query: 371 NLIRNLCTENTTGSFCCPREQILRPLSLRCPGTVCLPWK--RHCHNSPSRTGTFLSRS 538
+L+ C E + +I R L +C G LP + +H H++P R+ S+S
Sbjct: 391 DLLLKFCKETIVPYYSSKFPRITRNLLEKCNGLDLLPERSHKHRHSAPPRSKLISSKS 448
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 26.6 bits (56), Expect = 3.4
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 9/81 (11%)
Frame = -2
Query: 518 LSVMASCGNGASTVSTPSR-----DSEDLMASGFVPLGNKN----SLLYSLYTDFVSDFS 366
+S +S + ST+ST S S L S +P + + S++ S T +S S
Sbjct: 484 ISSSSSASSPQSTLSTSSEVVSEVSSTLLSGSSAIPSTSSSTPSSSIISSPMTSVLSSSS 543
Query: 365 SCLAWTSNLLSTVLTTISSGV 303
S +S+ S+ +TTISSG+
Sbjct: 544 SIPTSSSSDFSSSITTISSGI 564
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 25.8 bits (54), Expect = 6.0
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = -1
Query: 318 DLFGSILADIKAKLESLAVTLVLNERRV*AIPVTGLSKLSAVTVL*RC 175
D G I+ + K K + V LN+ R+ + TG + L+++ V RC
Sbjct: 843 DFCGFIVFENKLKSTTATVIRELNDARIRTVMCTGDNVLTSICVGKRC 890
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.8 bits (54), Expect = 6.0
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +1
Query: 292 VSQYTPEEIVVKTVDNKLLVHAKHEEKS-DTKSVYREYNREFLLPKGTNPEAIKSSL 459
V TP + V DNK LV K EK + +S E +E K T PE + +L
Sbjct: 1347 VPDSTPSDAVASETDNKNLVENKAVEKRVEARSSANERKQEERRRK-TTPEGNRRAL 1402
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +2
Query: 473 CLPWKRHCHNSPSRTGTFLSRSTERSHH 556
CL W RH +S SR+G ++H
Sbjct: 268 CLSWNRHVLSSGSRSGAIHHHDVRIANH 295
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 226 DSLNSPLIQDEGDGKTLKLRFDVSQYTPEEIVVKTVDNK 342
+S+ SP + EG +LK R + TP+ + T+D K
Sbjct: 554 NSITSPGVLPEGMAASLKKRTTNTAATPQAALPTTLDTK 592
>SPBC409.06 |uch2||ubiquitin C-terminal hydrolase
Uch2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 300
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +2
Query: 488 RHCHNSPSRTGTFLSRSTERSHHSPRVH*GSRYSITVNNLF 610
R CHNS +R+ F+S + V+ Y+ +NN+F
Sbjct: 131 RCCHNSFARSDPFISEEVRAATDEDEVYHFIAYT-NINNVF 170
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,625,295
Number of Sequences: 5004
Number of extensions: 53133
Number of successful extensions: 181
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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