Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0130
(702 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0485 - 8808139-8808618 38 0.010
03_02_0484 + 8805053-8805538 36 0.024
03_02_0483 - 8804021-8804485 36 0.024
07_03_1498 + 26995209-26995752,26995945-26996513 32 0.38
03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015 31 1.2
08_01_0380 - 3376475-3377116,3377722-3377919,3378381-3378556,337... 30 2.0
01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,117... 29 2.7
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 29 4.7
12_02_0769 + 23001558-23001995 28 6.2
01_06_0004 + 25507739-25508206,25509346-25509477,25509910-255100... 28 6.2
07_03_0943 - 22778877-22780970,22781376-22781480,22781481-227820... 28 8.3
07_03_0883 + 22280381-22280708,22282008-22282078,22282228-222823... 28 8.3
05_07_0270 + 28844330-28844727,28844847-28844969,28845082-28845490 28 8.3
01_05_0755 - 24941711-24942167,24942591-24942719,24942840-24943264 28 8.3
>03_02_0485 - 8808139-8808618
Length = 159
Score = 37.5 bits (83), Expect = 0.010
Identities = 30/77 (38%), Positives = 41/77 (53%), Gaps = 9/77 (11%)
Frame = +1
Query: 289 DVSQYTPEEIVVKTVDNKLLVHA-----KHEEKSDT-KSVYR---EYNREFLLPKGTNPE 441
DV EE+ V+ D +L + + EEKSD V R ++ R F LP+ T PE
Sbjct: 68 DVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPE 127
Query: 442 AIKSSLSRDGVLTVEAP 492
IK+S+ +GVLTV P
Sbjct: 128 QIKASM-ENGVLTVTVP 143
>03_02_0484 + 8805053-8805538
Length = 161
Score = 36.3 bits (80), Expect = 0.024
Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 9/77 (11%)
Frame = +1
Query: 289 DVSQYTPEEIVVKTVDNKLLVHA-----KHEEKSDT-KSVYR---EYNREFLLPKGTNPE 441
DV EE+ V+ D +L + + EEK+D V R ++ R F LP+ T PE
Sbjct: 70 DVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPE 129
Query: 442 AIKSSLSRDGVLTVEAP 492
IK+S+ +GVLTV P
Sbjct: 130 QIKASM-ENGVLTVTVP 145
>03_02_0483 - 8804021-8804485
Length = 154
Score = 36.3 bits (80), Expect = 0.024
Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 9/77 (11%)
Frame = +1
Query: 289 DVSQYTPEEIVVKTVDNKLLVHA-----KHEEKSDT-KSVYR---EYNREFLLPKGTNPE 441
DV EE+ V+ D +L + + EEK+D V R ++ R F LP+ T PE
Sbjct: 63 DVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPE 122
Query: 442 AIKSSLSRDGVLTVEAP 492
IK+S+ +GVLTV P
Sbjct: 123 QIKASM-ENGVLTVTVP 138
>07_03_1498 + 26995209-26995752,26995945-26996513
Length = 370
Score = 32.3 bits (70), Expect = 0.38
Identities = 22/79 (27%), Positives = 37/79 (46%)
Frame = +1
Query: 199 RQLAEPSHWDSLNSPLIQDEGDGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSD 378
++L P HW + P + + G G+ RF + TP E D+ + VH+ + SD
Sbjct: 245 KELEAPQHWSEMRCPQLANLGSGRFCIARFFHTWTTPMEPNSFGYDS-IKVHSFSDFDSD 303
Query: 379 TKSVYREYNREFLLPKGTN 435
+ S+ E F + GT+
Sbjct: 304 SDSIEFE-EHSFTVLTGTD 321
>03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015
Length = 327
Score = 30.7 bits (66), Expect = 1.2
Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Frame = +1
Query: 262 DGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSV------YRE-----YNR 408
D K +++RFD+ + EE+ V D+ L++ +H+++ + ++E Y+
Sbjct: 140 DDKEVRMRFDMPGLSREEVKVMVEDDALVIRGEHKKEEGEGAEGSGDGWWKERSVSSYDM 199
Query: 409 EFLLPKGTNPEAIKSSLSRDGVLTVEAP 492
LP + +++ L ++GVL V P
Sbjct: 200 RLALPDECDKSKVRAEL-KNGVLLVTVP 226
>08_01_0380 -
3376475-3377116,3377722-3377919,3378381-3378556,
3378681-3379703,3380476-3380593
Length = 718
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = +1
Query: 289 DVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLPKGT 432
DVS+ IVV +DNK+L A H S S +R + + +LP T
Sbjct: 41 DVSRSMDGSIVVHGLDNKILGDA-HPSSSSATSCFRTQSFDTVLPAST 87
>01_01_0128 -
1167904-1168749,1168790-1168863,1169419-1169491,
1171148-1171398,1171442-1171687,1172220-1172415,
1172796-1172876,1172966-1173169,1173671-1173880,
1173953-1174174,1174437-1174480,1174974-1175052,
1175066-1175227,1175337-1175564,1175786-1175815,
1175905-1176273,1176356-1176571,1177202-1177683,
1177930-1177975
Length = 1352
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 48 NLKHQRALRCRNEEDGRRNEQIQIRTHEQRK 140
NL+ QR R R EE+ R+ E+ + R +RK
Sbjct: 839 NLEEQRLQRLREEEEARKQEERRKREETERK 869
>04_03_0018 -
9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +2
Query: 305 LPKRSLLRLSTTNYWSMPNTRRNLIRNLCTE 397
L ++S L LST++ +S + RRNL+R+ T+
Sbjct: 715 LKRKSFLSLSTSSIFSPLSPRRNLLRSTSTD 745
>12_02_0769 + 23001558-23001995
Length = 145
Score = 28.3 bits (60), Expect = 6.2
Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 6/116 (5%)
Frame = +2
Query: 134 EKATISSRAQLARRHLHSTVTADSLLSPVTGIA*TRRSFKTRVTARLSSFALMSASILPK 313
EK +S+R R L D L+ V + ++ RV AR S A A + +
Sbjct: 28 EKRRLSNRESARRSRLRKQQHLDELVQEVARL----QADNARVLARASEIAGQYARVEQE 83
Query: 314 RSLLRLSTTNYWSMPNTRRNLIRNLCTENTTG------SFCCPREQILRPLSLRCP 463
++LR + ++R E +G C P + +LRP + CP
Sbjct: 84 NTVLRARAAELGDRLRSVNEVLR--VVEEFSGVAMDIQEECPPDDPLLRPWQIPCP 137
>01_06_0004 +
25507739-25508206,25509346-25509477,25509910-25510086,
25510175-25510219,25510305-25510512,25510766-25510825,
25510826-25511016,25511219-25511614
Length = 558
Score = 28.3 bits (60), Expect = 6.2
Identities = 23/68 (33%), Positives = 32/68 (47%)
Frame = -2
Query: 506 ASCGNGASTVSTPSRDSEDLMASGFVPLGNKNSLLYSLYTDFVSDFSSCLAWTSNLLSTV 327
A+C GASTV PS + F K ++L+ L V+ +S AW S LL +
Sbjct: 164 AACKQGASTVVVPSELEFLVGPISFSGPYCKPNILFQLDGTIVAP-TSAKAWGSGLLQWI 222
Query: 326 LTTISSGV 303
T +GV
Sbjct: 223 EFTKLNGV 230
>07_03_0943 -
22778877-22780970,22781376-22781480,22781481-22782059,
22782149-22782187,22782340-22782372
Length = 949
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 54 KHQRALRCRNEEDGRRNEQIQIRTH 128
K +R + C+NE GRRN R H
Sbjct: 631 KRRRLVSCKNERTGRRNTAANKRQH 655
>07_03_0883 +
22280381-22280708,22282008-22282078,22282228-22282345,
22282406-22282521,22283946-22284023,22284123-22284242,
22284332-22284391
Length = 296
Score = 27.9 bits (59), Expect = 8.3
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Frame = +2
Query: 266 ARLSSFALMSASILPKRSLLRLSTTNYWSMPNTRRNLIRN-LCTENTTGSFCCPREQILR 442
A S + ++ S+LP R LRL N P +R+ + +NT+ S + Q
Sbjct: 79 APAGSISSVAKSLLPARRRLRLDPPNKLYFPYQPGQQVRSAIRIKNTSKSHVAFKFQTTA 138
Query: 443 PLS--LRCPGTVCLP 481
P S +R PG + P
Sbjct: 139 PKSCFMRPPGAILAP 153
>05_07_0270 + 28844330-28844727,28844847-28844969,28845082-28845490
Length = 309
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Frame = -1
Query: 522 VPVRDG----ELWQWRFHGKHTVPGQRRLNGLRICS 427
VPV DG +LW WR +G+ + G G CS
Sbjct: 145 VPVADGGVSTDLWAWRKYGQKPIKGSPYPRGYYKCS 180
>01_05_0755 - 24941711-24942167,24942591-24942719,24942840-24943264
Length = 336
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Frame = -1
Query: 522 VPVRDG----ELWQWRFHGKHTVPGQRRLNGLRICS 427
VPV DG +LW WR +G+ + G G CS
Sbjct: 156 VPVADGGVSSDLWAWRKYGQKPIKGSPYPRGYYKCS 191
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,670,258
Number of Sequences: 37544
Number of extensions: 339136
Number of successful extensions: 1148
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1148
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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