Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0130
(702 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26) 56 2e-08
SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29) 52 3e-07
SB_21424| Best HMM Match : HSP20 (HMM E-Value=0) 52 5e-07
SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 5e-07
SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 52 5e-07
SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 52 5e-07
SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26) 50 2e-06
SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12) 50 2e-06
SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05) 42 6e-04
SB_6186| Best HMM Match : HSP20 (HMM E-Value=1.1e-06) 37 0.014
SB_19678| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.22
SB_3533| Best HMM Match : Pentapeptide (HMM E-Value=5.7) 30 1.6
SB_45697| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_99| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_2062| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_22756| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_43606| Best HMM Match : Y_phosphatase (HMM E-Value=3.9e-26) 29 4.8
SB_54185| Best HMM Match : Gal_Lectin (HMM E-Value=2.3) 28 6.4
SB_43049| Best HMM Match : DUF947 (HMM E-Value=4) 28 6.4
SB_20600| Best HMM Match : zf-C3HC4 (HMM E-Value=0.65) 28 6.4
SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26) 28 8.4
SB_53580| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_48575| Best HMM Match : CARD (HMM E-Value=5.3e-19) 28 8.4
SB_20040| Best HMM Match : DUF293 (HMM E-Value=2.9) 28 8.4
>SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)
Length = 185
Score = 56.4 bits (130), Expect = 2e-08
Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Frame = +1
Query: 262 DGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLPKGTNPE 441
D L DVS + PEE+ VK ++L V A+ E + R++NR F+LP+ + +
Sbjct: 96 DDTKFTLALDVSDFKPEEVDVKVYGHELSVRARQECEEHGFFTARQFNRHFVLPREVDMD 155
Query: 442 AIKSSLSRDGVLTVEA---PLPQLAI 510
+ L +DGVL +EA PL QL I
Sbjct: 156 TLVPRLGKDGVLYIEADKRPLRQLDI 181
Score = 46.4 bits (105), Expect = 2e-05
Identities = 22/67 (32%), Positives = 38/67 (56%)
Frame = +1
Query: 289 DVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLPKGTNPEAIKSSLSRD 468
DV ++ PEEI K + K+ V +S+ +E+ R + LP+G + +I + ++ D
Sbjct: 12 DVREFKPEEITCKVENGKIKVSGLQRHESEEGFDSKEFRRCYNLPEGVDESSISTRIAED 71
Query: 469 GVLTVEA 489
G+L VEA
Sbjct: 72 GMLHVEA 78
>SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)
Length = 189
Score = 52.4 bits (120), Expect = 3e-07
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Frame = +1
Query: 271 TLKL-RFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLPKGTNPEAI 447
TL++ + DV +Y PEEI K + + V +H + + +E+ R F LP+G +PE +
Sbjct: 6 TLEIAKLDVKEYRPEEISFKVENGVVKVQGRHVNEGEFGFELKEFRRTFTLPEGIDPENV 65
Query: 448 KSSLSRDGVLTVEA 489
S +S G L +EA
Sbjct: 66 TSRISNHGHLHIEA 79
Score = 50.8 bits (116), Expect = 1e-06
Identities = 23/70 (32%), Positives = 43/70 (61%)
Frame = +1
Query: 280 LRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLPKGTNPEAIKSSL 459
+ DV+ + PE I V+ + N+LLV+A HE + + +NR+F+LP+ + +++ + L
Sbjct: 100 MAIDVAGFPPESIKVQVLGNELLVNANHEVEHEGHYHAMHFNRQFVLPREVDMDSLTTRL 159
Query: 460 SRDGVLTVEA 489
++G L EA
Sbjct: 160 DKEGKLHFEA 169
>SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)
Length = 424
Score = 52.0 bits (119), Expect = 5e-07
Identities = 25/80 (31%), Positives = 47/80 (58%)
Frame = +1
Query: 250 QDEGDGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLPKG 429
+ +GD K + DV+ + P+ I V+ + N+LLV A HE + + +NR+F+LP+
Sbjct: 92 ESKGDDK-FSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGHYHAMHFNRQFVLPRE 150
Query: 430 TNPEAIKSSLSRDGVLTVEA 489
+ +++ + L ++G L EA
Sbjct: 151 VDMDSLTTRLDKEGKLHFEA 170
Score = 52.0 bits (119), Expect = 5e-07
Identities = 25/80 (31%), Positives = 47/80 (58%)
Frame = +1
Query: 250 QDEGDGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLPKG 429
+ +GD K + DV+ + P+ I V+ + N+LLV A HE + + +NR+F+LP+
Sbjct: 326 ESKGDDK-FSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGHYHAMHFNRQFVLPRE 384
Query: 430 TNPEAIKSSLSRDGVLTVEA 489
+ +++ + L ++G L EA
Sbjct: 385 VDMDSLTTRLDKEGKLHFEA 404
Score = 46.4 bits (105), Expect = 2e-05
Identities = 22/69 (31%), Positives = 35/69 (50%)
Frame = +1
Query: 283 RFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLPKGTNPEAIKSSLS 462
+ DV +Y PEEI K + + V +H + +E+ R F LP+G +K+ +S
Sbjct: 11 KLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFELKEFRRTFTLPEGVEASNVKTRIS 70
Query: 463 RDGVLTVEA 489
G L +EA
Sbjct: 71 NHGQLHIEA 79
Score = 46.4 bits (105), Expect = 2e-05
Identities = 22/69 (31%), Positives = 35/69 (50%)
Frame = +1
Query: 283 RFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLPKGTNPEAIKSSLS 462
+ DV +Y PEEI K + + V +H + +E+ R F LP+G +K+ +S
Sbjct: 245 KLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFELKEFRRTFTLPEGVEASNVKTRIS 304
Query: 463 RDGVLTVEA 489
G L +EA
Sbjct: 305 NHGQLHIEA 313
>SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 760
Score = 52.0 bits (119), Expect = 5e-07
Identities = 25/80 (31%), Positives = 47/80 (58%)
Frame = +1
Query: 250 QDEGDGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLPKG 429
+ +GD K + DV+ + P+ I V+ + N+LLV A HE + + +NR+F+LP+
Sbjct: 92 ESKGDDK-FSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGHYHAMHFNRQFVLPRE 150
Query: 430 TNPEAIKSSLSRDGVLTVEA 489
+ +++ + L ++G L EA
Sbjct: 151 VDMDSLTTRLDKEGKLHFEA 170
Score = 46.4 bits (105), Expect = 2e-05
Identities = 22/69 (31%), Positives = 35/69 (50%)
Frame = +1
Query: 283 RFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLPKGTNPEAIKSSLS 462
+ DV +Y PEEI K + + V +H + +E+ R F LP+G +K+ +S
Sbjct: 11 KLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFELKEFRRTFTLPEGVEASNVKTRIS 70
Query: 463 RDGVLTVEA 489
G L +EA
Sbjct: 71 NHGQLHIEA 79
>SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 52.0 bits (119), Expect = 5e-07
Identities = 25/80 (31%), Positives = 47/80 (58%)
Frame = +1
Query: 250 QDEGDGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLPKG 429
+ +GD K + DV+ + P+ I V+ + N+LLV A HE + + +NR+F+LP+
Sbjct: 92 ESKGDDK-FSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGHYHAMHFNRQFVLPRE 150
Query: 430 TNPEAIKSSLSRDGVLTVEA 489
+ +++ + L ++G L EA
Sbjct: 151 VDMDSLTTRLDKEGKLHFEA 170
Score = 46.4 bits (105), Expect = 2e-05
Identities = 22/69 (31%), Positives = 35/69 (50%)
Frame = +1
Query: 283 RFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLPKGTNPEAIKSSLS 462
+ DV +Y PEEI K + + V +H + +E+ R F LP+G +K+ +S
Sbjct: 11 KLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFELKEFRRTFALPEGVEASNVKTRIS 70
Query: 463 RDGVLTVEA 489
G L +EA
Sbjct: 71 NHGQLHIEA 79
>SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 52.0 bits (119), Expect = 5e-07
Identities = 25/80 (31%), Positives = 47/80 (58%)
Frame = +1
Query: 250 QDEGDGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLPKG 429
+ +GD K + DV+ + P+ I V+ + N+LLV A HE + + +NR+F+LP+
Sbjct: 92 ESKGDDK-FSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGHYHAMHFNRQFVLPRE 150
Query: 430 TNPEAIKSSLSRDGVLTVEA 489
+ +++ + L ++G L EA
Sbjct: 151 VDMDSLTTRLDKEGKLHFEA 170
Score = 46.4 bits (105), Expect = 2e-05
Identities = 22/69 (31%), Positives = 35/69 (50%)
Frame = +1
Query: 283 RFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLPKGTNPEAIKSSLS 462
+ DV +Y PEEI K + + V +H + +E+ R F LP+G +K+ +S
Sbjct: 11 KLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFELKEFRRTFALPEGVEASNVKTRIS 70
Query: 463 RDGVLTVEA 489
G L +EA
Sbjct: 71 NHGQLHIEA 79
>SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)
Length = 695
Score = 50.0 bits (114), Expect = 2e-06
Identities = 24/78 (30%), Positives = 42/78 (53%)
Frame = +1
Query: 256 EGDGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLPKGTN 435
E + DV + PE I V+ + N+LLV A HE + + +NR+F+LP+ +
Sbjct: 93 ESKDDKFSMAMDVKGFPPEAIKVQVLGNELLVSANHEVEHEGHYHAMHFNRQFILPREVD 152
Query: 436 PEAIKSSLSRDGVLTVEA 489
+++ + L ++G L EA
Sbjct: 153 MDSLTTRLDKEGKLHFEA 170
Score = 46.8 bits (106), Expect = 2e-05
Identities = 22/69 (31%), Positives = 35/69 (50%)
Frame = +1
Query: 283 RFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLPKGTNPEAIKSSLS 462
+ DV +Y PEEI K + + V +H + +E+ R F LP+G +K+ +S
Sbjct: 12 KLDVREYRPEEISFKVENGVVKVQGRHVNEGPFGFELKEFRRTFTLPEGVEASNVKTRIS 71
Query: 463 RDGVLTVEA 489
G L +EA
Sbjct: 72 NHGQLHIEA 80
>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
Length = 210
Score = 50.0 bits (114), Expect = 2e-06
Identities = 25/78 (32%), Positives = 41/78 (52%)
Frame = +1
Query: 256 EGDGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLPKGTN 435
EGD K DV Y PEEI +K ++ + KH+ + + E++R + LP G +
Sbjct: 36 EGD-KVEIATLDVKNYRPEEISLKVEHGRIKIDGKHKSEGEHGYETSEFHRSYNLPDGVD 94
Query: 436 PEAIKSSLSRDGVLTVEA 489
+ S ++ DG+L +EA
Sbjct: 95 VSTVSSRITGDGLLHIEA 112
Score = 31.5 bits (68), Expect = 0.68
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +1
Query: 403 NREFLLPKGTNPEAIKSSLSRDGVLTVEA 489
NR F+LPK + +++ S L +DG L +EA
Sbjct: 160 NRHFVLPKDVDMDSLVSRLGKDGKLYIEA 188
>SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05)
Length = 259
Score = 41.5 bits (93), Expect = 6e-04
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +1
Query: 262 DGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLPKGTN-P 438
D L DVS + PEE+ VK ++L V A+ E + R++NR F+LP+
Sbjct: 24 DDTKFTLALDVSDFKPEEVDVKVYGHELSVRARQECEEHGFFTARQFNRHFVLPQEVKIT 83
Query: 439 EAIKSSLSR 465
IK ++S+
Sbjct: 84 HQIKHAISK 92
>SB_6186| Best HMM Match : HSP20 (HMM E-Value=1.1e-06)
Length = 237
Score = 37.1 bits (82), Expect = 0.014
Identities = 21/100 (21%), Positives = 46/100 (46%)
Frame = +1
Query: 226 DSLNSPLIQDEGDGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYN 405
++ I + D +KL +V + +++ ++ L++ + +K D R++
Sbjct: 84 ETFTPTFIVTQNDKNGIKLEMNVRGFAAKDVSLQVDGQDLIIKGEKMDKDDGWCKMRQFC 143
Query: 406 REFLLPKGTNPEAIKSSLSRDGVLTVEAPLPQLAITDRNI 525
PK T+ ++IK++L +L +EA +L T I
Sbjct: 144 WRRRFPKSTDMKSIKATLKYGDILEIEAQKERLIDTSGKI 183
>SB_19678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 849
Score = 33.1 bits (72), Expect = 0.22
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +1
Query: 262 DGKTLKLRFDVSQYTPEEIVVKTVDNKLLV---HAKHEEKSDTKSVYREYNREFLLPKGT 432
+ T ++ D + P + ++ NK +V +A+ + K D S YR R LP+G
Sbjct: 702 ENATHSVQSDTYSHIPGDDTFESCRNKFVVKEVYAESDTKPDVISDYRRGQRRRTLPRGC 761
Query: 433 NPE 441
NPE
Sbjct: 762 NPE 764
>SB_3533| Best HMM Match : Pentapeptide (HMM E-Value=5.7)
Length = 416
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/81 (23%), Positives = 41/81 (50%)
Frame = +1
Query: 190 SDSRQLAEPSHWDSLNSPLIQDEGDGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEE 369
++ RQLAE +H++ ++ L Q++G + ++F Y+ + T++++ V+ +
Sbjct: 45 AEPRQLAE-AHFNHVSWQLNQEDGQLEIADVKFMDFSYSKTTLTDATIEHRFEVNRCNMR 103
Query: 370 KSDTKSVYREYNREFLLPKGT 432
S+Y+ Y KGT
Sbjct: 104 NLLPNSIYKVYKSYQKRTKGT 124
>SB_45697| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 734
Score = 29.9 bits (64), Expect = 2.1
Identities = 20/53 (37%), Positives = 29/53 (54%)
Frame = +1
Query: 49 ISSIRERFDAEMRKMEEEMSKFRSELMNRESNNFFKXXXXXXXXXQHSDSRQL 207
ISS+RE DA RKM ++SK +L +E+N + QHSD+ +L
Sbjct: 259 ISSLREIVDARERKM-VQLSKDNIDL--QETNAILRSQLEQLESMQHSDNAEL 308
>SB_99| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 965
Score = 29.5 bits (63), Expect = 2.8
Identities = 21/76 (27%), Positives = 35/76 (46%)
Frame = +2
Query: 323 LRLSTTNYWSMPNTRRNLIRNLCTENTTGSFCCPREQILRPLSLRCPGTVCLPWKRHCHN 502
LR+ ++ N+ + +R ++N+ GS C R+Q + + PG V L WKR C
Sbjct: 866 LRVCNRRRHTVYNSNKGSVRVHPSDNS-GSLNC-RKQTNQTTAFTWPGVVNLTWKRGCQT 923
Query: 503 SPSRTGTFLSRSTERS 550
+ + S T S
Sbjct: 924 MRNMRSSTRSAVTSPS 939
>SB_2062| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1136
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -1
Query: 549 DRSVLLDRNVPVRDGELWQWRFHGKHTVPGQRR 451
D S L++ +P++D L RF G VPG++R
Sbjct: 444 DSSQALEKILPLQDKPLATVRFQGSRKVPGKKR 476
>SB_22756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 206
Score = 28.7 bits (61), Expect = 4.8
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 5/83 (6%)
Frame = +2
Query: 386 LCTENTTGSFCCPREQILRPLSLRCPGTVC-LPWKRHCHNSPSRTG----TFLSRSTERS 550
+CTE CPR + + RC T+C +P H ++ T L
Sbjct: 65 VCTEEFLSLTVCPRHRDSYGIRYRCHKTLCSVPATFASHGKKAKVDKASITLLQSEQLFK 124
Query: 551 HHSPRVH*GSRYSITVNNLFLIY 619
V GSRY I + N+ L Y
Sbjct: 125 QTGHLVPVGSRYRIDIMNIALPY 147
>SB_43606| Best HMM Match : Y_phosphatase (HMM E-Value=3.9e-26)
Length = 280
Score = 28.7 bits (61), Expect = 4.8
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +2
Query: 323 LRLSTTNYWSMPNTRRNLIRNLCTENTTGSFCCPREQILRPLSLRCPGTVCLPWKRHCHN 502
LR+ ++ N+ + +R ++N+ GS C R+Q + + PG V L WKR C
Sbjct: 186 LRVCHRRRQTVYNSNKGSVRVHPSDNS-GSLNC-RKQTNQTTAFTWPGVVNLTWKRGCQT 243
Query: 503 SPS-RTGTFLS 532
+ R G + S
Sbjct: 244 MRNMRRGAYNS 254
>SB_54185| Best HMM Match : Gal_Lectin (HMM E-Value=2.3)
Length = 225
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +2
Query: 323 LRLSTTNYWSMPNTRRNLIRNLCTENTTGSFCCPREQILRPLSLRCPGTVCLPWKRHC 496
LR+ ++ N+ + +R ++N+ GS C R+Q + + PG V L WKR C
Sbjct: 145 LRVCHRRRQTVYNSNKGSVRVHPSDNS-GSLNC-RKQTNQTTAFTWPGVVNLTWKRGC 200
>SB_43049| Best HMM Match : DUF947 (HMM E-Value=4)
Length = 209
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 15 TRLAIFRLSIQNLKHQRALRCRNEEDGRRNEQIQI 119
T L R+ +N +HQ LR NEE + EQ++I
Sbjct: 145 TALKQKRIDDKNREHQEELRKLNEEQNDKYEQVEI 179
>SB_20600| Best HMM Match : zf-C3HC4 (HMM E-Value=0.65)
Length = 963
Score = 28.3 bits (60), Expect = 6.4
Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
Frame = -2
Query: 581 CCLSGLVANDETAQCFWIGM--FLSVMASCGNGASTVSTPSRDSEDLMASGFVPLGNKNS 408
CC S + D + G S++ + + + TP+ E SGF+ + NS
Sbjct: 161 CCSSSRIETDSVSLSSQNGSPKDASLLMATSHPMAVPGTPAIPIEPEEDSGFMASIDSNS 220
Query: 407 LLYSLYTDFVSDFSSCLAWTSNLLSTVLTTISSG 306
S+ + + S C ++ L + +T+I SG
Sbjct: 221 FAGSMTSLYTPSSSPCGSFQRRLYRSQVTSIDSG 254
>SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26)
Length = 2157
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 193 DSRQLAEPSHWDSLNSPLIQDEGDGKTLKLRFDVSQYTPEE 315
DS + E + WD+ + D+GD KT++ D S Y E
Sbjct: 1566 DSHEGKEKNEWDNYDGD--NDDGDSKTIEANKDKSVYHHSE 1604
>SB_53580| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 940
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -2
Query: 584 ICCLSGLVANDETAQCFWIGMFLSVMASCGNGASTVSTPS 465
+ L+ +AN+ T + WIG F +V S G +S P+
Sbjct: 61 LATLTASIANNSTRKKLWIGAFFTVDISDGGWSSAGVLPA 100
>SB_48575| Best HMM Match : CARD (HMM E-Value=5.3e-19)
Length = 618
Score = 27.9 bits (59), Expect = 8.4
Identities = 21/61 (34%), Positives = 27/61 (44%)
Frame = -2
Query: 482 TVSTPSRDSEDLMASGFVPLGNKNSLLYSLYTDFVSDFSSCLAWTSNLLSTVLTTISSGV 303
T S+ D M GF LGNK L SL + ++ L S L S V + SGV
Sbjct: 318 TFSSNFHDIRAFMDGGFASLGNKEGQLLSLDISLLEFENNMLPHVSCLDSVVFVCL-SGV 376
Query: 302 Y 300
+
Sbjct: 377 H 377
>SB_20040| Best HMM Match : DUF293 (HMM E-Value=2.9)
Length = 646
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +1
Query: 247 IQDEGDGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYN 405
IQ G+T ++ S+Y E V +DN+ ++ +K EE K+V E++
Sbjct: 57 IQIVSQGETFRVFDGSSRYIGEAEVTTILDNQQILGSKMEESGLNKTVTVEFD 109
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,598,577
Number of Sequences: 59808
Number of extensions: 403629
Number of successful extensions: 1420
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1419
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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