Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0130
         (702 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.6  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   6.5  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   6.5  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   8.6  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   8.6  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   8.6  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    21   8.6  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 503 SCGNGASTVSTPSRDSEDL 447
           SCG G + ++TP  DS+ +
Sbjct: 369 SCGGGPTILTTPGLDSDGI 387


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 497 HNSPSRTGTFLSRSTERSHHSP 562
           HNSPS TG+    S   +  SP
Sbjct: 59  HNSPSPTGSSPQHSGSSASTSP 80


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -1

Query: 342 FVVDSLNNDLF 310
           F+VD L NDLF
Sbjct: 96  FIVDRLRNDLF 106


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +1

Query: 307 PEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLPKG 429
           P+E+    + N+L+V     E     S    +    LLPKG
Sbjct: 567 PDEVPSDVLYNRLVVSEDGSETFKYSSQPYGFPERLLLPKG 607


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 12/39 (30%), Positives = 14/39 (35%)
 Frame = +2

Query: 446 LSLRCPGTVCLPWKRHCHNSPSRTGTFLSRSTERSHHSP 562
           L +R P    L W     N    T T+    TE   H P
Sbjct: 346 LMMRRPKKTRLRWMMEIPNVTLPTSTYSGSPTELPKHLP 384


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +1

Query: 307 PEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLPKG 429
           P+E+    + N+L+V     E     S    +    LLPKG
Sbjct: 567 PDEVPSDVLYNRLVVSEDGSETFKYSSQPYGFPERLLLPKG 607


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/38 (26%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
 Frame = +3

Query: 39  SIQNLKHQRAL----RCRNEEDGRRNEQIQIRTHEQRK 140
           S+ +L++ +++      +NE+  +  EQ++ R  EQR+
Sbjct: 44  SLNSLRNHKSIYHRQHSKNEQQRKEMEQMREREREQRE 81


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,022
Number of Sequences: 438
Number of extensions: 3470
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)