Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0130
(702 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g07400.1 68414.m00789 17.8 kDa class I heat shock protein (HS... 36 0.026
At4g27670.1 68417.m03979 25.3 kDa small heat shock protein, chlo... 35 0.045
At1g35515.1 68414.m04409 myb family transcription factor (MYB8) ... 30 1.3
At2g20950.4 68415.m02474 expressed protein 29 3.0
At2g20950.3 68415.m02473 expressed protein 29 3.0
At2g20950.2 68415.m02472 expressed protein 29 3.0
At2g20950.1 68415.m02471 expressed protein 29 3.0
At1g55970.1 68414.m06419 histone acetyltransferase 4 (HAC4) simi... 29 3.9
At5g54110.1 68418.m06737 vesicle-associated membrane family prot... 28 5.2
At5g45270.1 68418.m05556 WRKY family transcription factor contai... 28 5.2
At5g02290.2 68418.m00153 protein kinase, putative similar to pro... 28 6.9
At5g02290.1 68418.m00152 protein kinase, putative similar to pro... 28 6.9
At1g59750.2 68414.m06728 auxin-responsive factor (ARF1) identica... 28 6.9
At1g59750.1 68414.m06727 auxin-responsive factor (ARF1) identica... 28 6.9
At3g61415.1 68416.m06878 SKP1 family protein low similarity to S... 27 9.1
>At1g07400.1 68414.m00789 17.8 kDa class I heat shock protein
(HSP17.8-CI) similar to 17.5 kDa class I heat shock
protein SP:P04793 from [Glycine max]; contains Pfam
PF00011: Hsp20/alpha crystallin family
Length = 157
Score = 35.9 bits (79), Expect = 0.026
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 9/77 (11%)
Frame = +1
Query: 289 DVSQYTPEEIVVKTVDNKLLV-----HAKHEEKSDT-KSVYR---EYNREFLLPKGTNPE 441
D+ EE+ V+ D+ +L H + EEK DT V R +++R+F LP+ +
Sbjct: 64 DLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGQFSRKFKLPENVKMD 123
Query: 442 AIKSSLSRDGVLTVEAP 492
+K+S+ +GVLTV P
Sbjct: 124 QVKASM-ENGVLTVTVP 139
>At4g27670.1 68417.m03979 25.3 kDa small heat shock protein,
chloroplast precursor (HSP25.3-P) identical to small
heat shock protein, chloroplast precursor SP:P31170 from
[Arabidopsis thaliana]; identified in Scharf, K-D., et
al,Cell Stress & Chaperones (2001) 6: 225-237.
Length = 227
Score = 35.1 bits (77), Expect = 0.045
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Frame = +1
Query: 274 LKLRFDVSQYTPEEIVVKTVDNKLLV--HAKHEEKSDTKS--VYREYNREFLLPKGTNPE 441
+K+RFD+ + E++ + DN L++ K E+ D+ S Y LP +
Sbjct: 138 IKMRFDMPGLSKEDVKISVEDNVLVIKGEQKKEDSDDSWSGRSVSSYGTRLQLPDNCEKD 197
Query: 442 AIKSSLSRDGVLTVEAP 492
IK+ L ++GVL + P
Sbjct: 198 KIKAEL-KNGVLFITIP 213
>At1g35515.1 68414.m04409 myb family transcription factor (MYB8)
similar to DNA-binding protein GB:AAA98761 GI:1020155
from [Arabidopsis thaliana]
Length = 212
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Frame = +2
Query: 341 NYWSMPNTRRNLIRNLCTENTTGSFCCPREQILRP----LSLRCPGTVCLPWKRHCHNSP 508
NYW+ + +R L+ T GS P+ P L PG+V L + C N
Sbjct: 106 NYWNT-HIKRKLLNRGIDPKTHGSIIEPKTTSFHPRNEDLKSTFPGSVKLKMETSCENCA 164
Query: 509 SRTGT 523
S +GT
Sbjct: 165 STSGT 169
>At2g20950.4 68415.m02474 expressed protein
Length = 530
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +1
Query: 7 ESARGWRFFGYRYRISSIRERFDAEMRKMEEEMSKFRSELMNRE 138
E A ++G +RE D EM ++EM + R EL RE
Sbjct: 438 ELAEAVEYYGKYDTAKIVREECDREMTAGKKEMEEMREELRRRE 481
>At2g20950.3 68415.m02473 expressed protein
Length = 505
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +1
Query: 7 ESARGWRFFGYRYRISSIRERFDAEMRKMEEEMSKFRSELMNRE 138
E A ++G +RE D EM ++EM + R EL RE
Sbjct: 413 ELAEAVEYYGKYDTAKIVREECDREMTAGKKEMEEMREELRRRE 456
>At2g20950.2 68415.m02472 expressed protein
Length = 503
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +1
Query: 7 ESARGWRFFGYRYRISSIRERFDAEMRKMEEEMSKFRSELMNRE 138
E A ++G +RE D EM ++EM + R EL RE
Sbjct: 411 ELAEAVEYYGKYDTAKIVREECDREMTAGKKEMEEMREELRRRE 454
>At2g20950.1 68415.m02471 expressed protein
Length = 520
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +1
Query: 7 ESARGWRFFGYRYRISSIRERFDAEMRKMEEEMSKFRSELMNRE 138
E A ++G +RE D EM ++EM + R EL RE
Sbjct: 428 ELAEAVEYYGKYDTAKIVREECDREMTAGKKEMEEMREELRRRE 471
>At1g55970.1 68414.m06419 histone acetyltransferase 4 (HAC4) similar
to CREB-binding protein GB:AAC51770 GI:2443859 from
[Homo sapiens]; contains Pfam PF02135: TAZ zinc finger
profile; contains Pfam PF00569: Zinc finger, ZZ type
domain; identical to histone acetyltransferase HAC4
(GI:14794966) {Arabidopsis thaliana}
Length = 1456
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 260 VTARLSSFALMSASILPKRSLLR-LSTTNYWSMPNTRRNL 376
VT+ S+ M + LPKR L L TN+ S PN R NL
Sbjct: 315 VTSYHSNLQPMQQTPLPKRQLHHPLWNTNFQSAPNNRDNL 354
>At5g54110.1 68418.m06737 vesicle-associated membrane family protein
/ VAMP family protein similar to VAP27 GI:6688926
[Nicotiana plumbaginifolia]
Length = 266
Score = 28.3 bits (60), Expect = 5.2
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Frame = +2
Query: 290 MSASILPKRSLLRLSTTNYWSMPNTRRNLIRN-LCTENTTGSFCCPREQILRPLS--LRC 460
++ S+LP R LRL ++Y P +R+ + +NT+ S + Q P S +R
Sbjct: 66 VARSLLPARRRLRLDPSSYLYFPYEPGKQVRSAIKLKNTSKSHTAFKFQTTAPKSCYMRP 125
Query: 461 PGTVCLP 481
PG V P
Sbjct: 126 PGGVLAP 132
>At5g45270.1 68418.m05556 WRKY family transcription factor contains
Pfam profile: PF03106 WRKY DNA -binding domain
Length = 114
Score = 28.3 bits (60), Expect = 5.2
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -1
Query: 516 VRDGELWQWRFHGKHTVPGQRRLNGLRICS 427
+ +G+LW WR +G+ + G R G C+
Sbjct: 31 IDEGDLWTWRKYGQKDILGSRFPRGYYRCA 60
>At5g02290.2 68418.m00153 protein kinase, putative similar to
protein kinase APK1A [Arabidopsis thaliana]
SWISS-PROT:Q06548
Length = 389
Score = 27.9 bits (59), Expect = 6.9
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 3/103 (2%)
Frame = +2
Query: 248 FKTRVTARLSSFALMSASILPKRSLLRLSTTNYWSMPNTRRNLIRNLCTENTTGSFCCPR 427
F R+ ++S +S+ L + ST ++ MP T +++N +N + S
Sbjct: 5 FSNRIKTDIASSTWLSSKFLSRDGSKGSSTASFSYMPRTEGEILQNANLKNFSLSELKSA 64
Query: 428 EQILRPLSLRCP---GTVCLPWKRHCHNSPSRTGTFLSRSTER 547
+ RP S+ G V W +PS+ GT + + +R
Sbjct: 65 TRNFRPDSVVGEGGFGCVFKGWIDESSLAPSKPGTGIVIAVKR 107
>At5g02290.1 68418.m00152 protein kinase, putative similar to
protein kinase APK1A [Arabidopsis thaliana]
SWISS-PROT:Q06548
Length = 389
Score = 27.9 bits (59), Expect = 6.9
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 3/103 (2%)
Frame = +2
Query: 248 FKTRVTARLSSFALMSASILPKRSLLRLSTTNYWSMPNTRRNLIRNLCTENTTGSFCCPR 427
F R+ ++S +S+ L + ST ++ MP T +++N +N + S
Sbjct: 5 FSNRIKTDIASSTWLSSKFLSRDGSKGSSTASFSYMPRTEGEILQNANLKNFSLSELKSA 64
Query: 428 EQILRPLSLRCP---GTVCLPWKRHCHNSPSRTGTFLSRSTER 547
+ RP S+ G V W +PS+ GT + + +R
Sbjct: 65 TRNFRPDSVVGEGGFGCVFKGWIDESSLAPSKPGTGIVIAVKR 107
>At1g59750.2 68414.m06728 auxin-responsive factor (ARF1) identical
to auxin response factor 1 GI:2245378 from [Arabidopsis
thaliana]
Length = 662
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 301 YTPEEIVVKTVDNKLLVHAKHEEKSDTK 384
YTPEE+ + NKL V+A+ + K+D +
Sbjct: 619 YTPEEVKKLSPKNKLAVNARMQLKADAE 646
>At1g59750.1 68414.m06727 auxin-responsive factor (ARF1) identical
to auxin response factor 1 GI:2245378 from [Arabidopsis
thaliana]
Length = 665
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 301 YTPEEIVVKTVDNKLLVHAKHEEKSDTK 384
YTPEE+ + NKL V+A+ + K+D +
Sbjct: 622 YTPEEVKKLSPKNKLAVNARMQLKADAE 649
>At3g61415.1 68416.m06878 SKP1 family protein low similarity to
SP|P52285 Glycoprotein FP21 precursor {Dictyostelium
discoideum}; contains Pfam profile PF01466: Skp1 family,
dimerisation domain
Length = 351
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -1
Query: 456 RRLNGLRICSLGQQKLPVVFSVH 388
RRLN + S+GQ++ PV FS++
Sbjct: 313 RRLNSSWVLSIGQERQPVNFSIN 335
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,575,724
Number of Sequences: 28952
Number of extensions: 276096
Number of successful extensions: 992
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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